DRSC/TRiP Functional Genomics Resources

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Protein Alignment yellow-g and smp-30

DIOPT Version :9

Sequence 1:NP_523888.1 Gene:yellow-g / 38294 FlyBaseID:FBgn0041709 Length:393 Species:Drosophila melanogaster
Sequence 2:NP_001262580.1 Gene:smp-30 / 41786 FlyBaseID:FBgn0038257 Length:306 Species:Drosophila melanogaster


Alignment Length:177 Identity:44/177 - (24%)
Similarity:65/177 - (36%) Gaps:55/177 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 KGECLTKIAPYPCWAIQEEGNCQALQSVVDIAVDQNGLLWALDVGIVNTLEQPIRRCSPKIVAIN 176
            |||..:       |  |..|...|::|.|.|:   |||.|  ||.            :.|...|:
  Fly   140 KGELYS-------W--QAGGQPNAIRSKVGIS---NGLAW--DVK------------AKKFYFID 178

  Fly   177 TANHKVVKSIDLSDLVTSESRLQFIVVDYSK--------------DNKPFVYVADAGARSIL-VY 226
            |.||:|: :.|.:....:.|..: ::.|..|              |....:|||.....::. |.
  Fly   179 TNNHEVL-AYDYNQSTGAVSNPK-VIFDLRKIRPEGPLFPDGMTVDTDGNIYVATFNGGTVFKVN 241

  Fly   227 DITGNKSYRIVLPKAT-------APTSDVLYVALTS-----KPDGTS 261
            ..||.....|.:|...       .|..|:|||...:     ||.||:
  Fly   242 PSTGKILLEIKIPTTQITSVAFGGPNLDILYVTTANKFDQPKPAGTT 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yellow-gNP_523888.1 MRJP 137..391 CDD:281074 37/152 (24%)
smp-30NP_001262580.1 SGL 18..277 CDD:285626 40/164 (24%)
NHL 168..>248 CDD:302697 19/93 (20%)
NHL repeat 168..208 CDD:271320 11/53 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3386
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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