DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ecd and ecd

DIOPT Version :9

Sequence 1:NP_647707.1 Gene:ecd / 38291 FlyBaseID:FBgn0000543 Length:684 Species:Drosophila melanogaster
Sequence 2:XP_002936899.2 Gene:ecd / 100493000 XenbaseID:XB-GENE-988994 Length:648 Species:Xenopus tropicalis


Alignment Length:699 Identity:232/699 - (33%)
Similarity:347/699 - (49%) Gaps:117/699 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 NLEFVREEDFVEY--YIFPKIPDNVQDEGALRKLMLQIRNEISAIVREKSLERSYLWHKDEFQLQ 70
            |.:.|..||||||  |:..:.|.:.:.|   ||::.:....|  :.:...|...|:|....|.|:
 Frog    10 NKKLVVVEDFVEYKLYMVTQKPSDAETE---RKILQEYIERI--LAKFAPLLAPYIWQNQPFNLR 69

  Fly    71 VRLGGAEERLLNEETNPEEEAELGDLPPHFHGVTHYGDNISDEWFVVYLLTEITRARGDCIARVS 135
            .:                  |:.||.|.:..|:|::||||.||||:|||:.:||:...:..|.|.
 Frog    70 YK------------------AKKGDTPANIGGMTYFGDNIEDEWFIVYLIQQITKEYPELAASVE 116

  Fly   136 DSDGEFLLIEAADALPDWASPETCEQRVYLVGGHLQLLQNSAASSQDK----------PLTMAMA 190
            |:|||||||||||.||.|..||....||:...|.|::|    ...||:          .:|.|:|
 Frog   117 DNDGEFLLIEAADFLPKWLKPENSSNRVFFYHGKLRIL----PVCQDEGDLHDPVNNINITQALA 177

  Fly   191 VQRIRMNPTLYRCSQEIQSCIDARLKEY--QIAQPHFSIHRQVLELPHSAAQLLKQKPRLLSSAV 253
            :  :..:|..:..|..|...:..|:..|  :|..   |:||....:|.....:||::|.|:|:.|
 Frog   178 L--LSAHPEGFLASGSIAKAVQRRIAGYPEKIKD---SLHRAHCFVPARIVAILKERPSLVSAGV 237

  Fly   254 RAFCERDSLDIKALRTMRYFPPEATRVRTNVRFTRCLYAMLSHQQYLPEKRLGWHLTDPVSEPER 318
            :||..||.:|:|:.||..||.|| |:|.|:|.||:||||.||.|::.|:||.|:.|  |......
 Frog   238 QAFYLRDPIDLKSCRTFCYFLPE-TQVLTSVTFTKCLYAQLSQQKFHPDKRSGYAL--PALSDPT 299

  Fly   319 YKEQLLGLKLASGLEILATQAKRVEGQQLE---DLPAWRSYLRSLLSKGYFRDNIEGSAEYQELL 380
            ||...||:|||.|.|||.::..:.......   ..|.|..:|.:|....||:..:||||:|.|||
 Frog   300 YKAHELGMKLAHGFEILCSKCTQTSSDATRSPLQTPLWTGFLNALKKNDYFKGEMEGSAQYSELL 364

  Fly   381 NKAKVYFRGNQERFRTASRA---GAEILDLLLHPAEAASEELRDEENNLQPSDSDEWLNISAEDL 442
            ..|::||..:..| ..:|:|   |.|::. ||:......|.|.:||.||.|.:.|.||::|.|.|
 Frog   365 KHAEIYFMQSVIR-PESSKALSPGEEVIH-LLNTLPVDMEALNNEEANLPPDEDDSWLDLSPERL 427

  Fly   443 DSMLQDRYGPKKLYKPNG-----QMNAEEFTKQLAEFLDRQSNYEGIEHRGLEEPELDSDDDEPP 502
            :.:|||...||: |.|..     :.|..|.|:.:..|:.:.|:     |.|.|.|.:..:    .
 Frog   428 EQILQDAASPKE-YVPTATENEQKYNLSEVTESMKAFISKVSS-----HEGAEVPRVPCE----A 482

  Fly   503 PQANGSTGLTAKVKK--NPSMRKACQRNSVIQPEEPDSTHVRNFLDFVIPEDNWDSTSEMSDYAD 565
            |.:......|:.::|  .|.            |||.||..:....:|.:.:.:.|:..|......
 Frog   483 PISFDVESFTSALEKILGPG------------PEELDSDDLETEEEFELLDSDEDAAEEQGRPCK 535

  Fly   566 EDDMESNLNALSGGGSVFPLDRQIQSYMEQMDRELAQTSVGKSF----------H-GKKKTAPQA 619
            :|                || |.:.||||.||||||||::||||          | |.:|....:
 Frog   536 DD----------------PL-RSLHSYMEIMDRELAQTNIGKSFTTKTKMSATTHAGAQKAEDSS 583

  Fly   620 DEDD--FDDIEDFEPININVNTLRNMMDSYQSQVGGAGPVSNLFSAMGV 666
            .|||  .||:. ...:::::|.:.|::.||.||.|.|||.||:..:||:
 Frog   584 SEDDNTADDVR-LSQVDVDLNLVTNLLQSYSSQAGLAGPASNILQSMGI 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ecdNP_647707.1 SGT1 18..619 CDD:284501 208/638 (33%)
ecdXP_002936899.2 SGT1 20..601 CDD:369204 195/607 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 282 1.000 Domainoid score I1640
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H5256
Inparanoid 1 1.050 319 1.000 Inparanoid score I2491
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D359582at33208
OrthoFinder 1 1.000 - - FOG0005816
OrthoInspector 1 1.000 - - oto103654
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4794
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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