DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ecd and ecd

DIOPT Version :10

Sequence 1:NP_647707.1 Gene:ecd / 38291 FlyBaseID:FBgn0000543 Length:684 Species:Drosophila melanogaster
Sequence 2:NP_956185.3 Gene:ecd / 100003562 ZFINID:ZDB-GENE-030131-6304 Length:630 Species:Danio rerio


Alignment Length:687 Identity:215/687 - (31%)
Similarity:347/687 - (50%) Gaps:111/687 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 EDFVEYYIFPKIPDNVQDEGALRKLMLQIRNEISAIVREKSLERSYLWHKDEFQLQVRLGGAEER 79
            ||.|:|.:|....|....|.:|::::..|..||:.::      ..|:|....|.|          
Zfish    11 EDAVQYKLFVVAADPSAPEKSLQQILQDILAEITPLL------VPYIWQHQPFNL---------- 59

  Fly    80 LLNEETNPEEEAELGDLPPHFHGVTHYGDNISDEWFVVYLLTEITRARGDCIARVSDSDGEFLLI 144
                    .:..|.||:|.|..|||.:|||:.||||:||||..||....|....|.|:||:||||
Zfish    60 --------TQHPEKGDVPAHLGGVTEFGDNVEDEWFIVYLLKHITHTFTDIAGVVYDNDGQFLLI 116

  Fly   145 EAADALPDWASPETCEQRVYLVGGHLQLLQNSAAS-----SQDKPLTMAMAVQRIRMNPTLYRCS 204
            |||:.||.|..|::.|.||:|..|.|.::..|::|     |:|...|:..|::.:..:.......
Zfish   117 EAAEHLPKWLDPDSSENRVFLYHGELHIIPMSSSSGEVGFSRDCVPTVRQALEVLHSHTDRCLAK 181

  Fly   205 QEIQSCIDARLKEY--QIAQPHFSIHRQVLELPHSAAQLLKQKPRLLSSAVRAFCERDSLDIKAL 267
            |.|:|.::.|:..|  :|.|   ::|.....:|...|.:|.::|.|::.||.||..||.:|::|.
Zfish   182 QNIRSALNQRIHGYPDKIQQ---NVHCAHCYVPAGIAVVLSRRPDLIAPAVSAFYLRDLVDLQAC 243

  Fly   268 RTMRYFPPEATRVRTNVRFTRCLYAMLSHQQYLPEKRLGWHLTDPVSEPERYKEQLLGLKLASGL 332
            ||...|||: |||.|:|:|||||||.|..|.::|::|.|:.|  |.....:|:...||:|||.|.
Zfish   244 RTFHTFPPD-TRVMTSVKFTRCLYAQLQQQSFVPDRRSGFSL--PARSHPQYRAHELGMKLAHGF 305

  Fly   333 EILATQAKRVEGQQ---LEDLPAWRSYLRSLLSKGYFRDNIEGSAEYQELLNKAKVYFRGNQERF 394
            |||.::.......|   :...|.||.:|.||...|||:.|:||||.|:||:..|:.:||.:..|.
Zfish   306 EILCSKNGESSSDQEPSVSSNPLWRGFLESLKKNGYFKGNLEGSARYKELMTSAESFFRQSVTRT 370

  Fly   395 RTAS--RAGAEILDLLLHPAEAASEELRDEENNLQPSDSDEWLNISAEDLDSMLQDRYG----PK 453
            ....  ..|.|:|. :|..|..:.|:|:.:|.||.|.|||.||:||.::|:.:|.:|.|    .:
Zfish   371 HRPDIHNPGGEVLK-VLQSASYSLEDLKKQEANLPPEDSDAWLDISPQELERLLAERGGRGGTGE 434

  Fly   454 KLYKPNGQMNAEEFTKQLAEFLDRQSNYEGIEHRGLEEPELDSDDDEPPPQANGSTGLTAKVKKN 518
            ::.:.....:....|:.:..|::..|::||.|                                 
Zfish   435 EVQEEESGYSLIAVTQGMKNFINAMSSHEGAE--------------------------------- 466

  Fly   519 PSMRKACQRNSVIQPEEPDSTHVRNFLDFVI--PEDNWDSTSEMSDYADEDD---------MESN 572
                  ..|:.:.:|...|...|.:.||.::  .:|..||    .|:.||||         ::|:
Zfish   467 ------IPRSCLAEPFRFDPDSVTSALDRLLGAKDDELDS----DDFEDEDDDDDDDDDEAVQSS 521

  Fly   573 LNALSGGGSVFPLDRQIQSYMEQMDRELAQTSVGKSFHGKKKTAPQADEDDFDD-------IED- 629
            :......|:. .|| .::.||::||:||..|::||||....:::.:|:......       :|| 
Zfish   522 VPQEQATGAE-TLD-NLRKYMDEMDQELQSTNIGKSFTQNNRSSNKAEASKSSSSTSASELLEDE 584

  Fly   630 FEPININVNTLRNMMDSYQSQVGGAGPVSNLFSAMGV 666
            .:|:::::|.:.|:::|..||.|.|||.|||..::|:
Zfish   585 IQPLDVDLNLVTNLLESLSSQAGLAGPASNLLQSLGL 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ecdNP_647707.1 SGT1 18..617 CDD:462089 196/625 (31%)
ecdNP_956185.3 None

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