DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1275 and F39G3.5

DIOPT Version :10

Sequence 1:NP_647703.1 Gene:CG1275 / 38286 FlyBaseID:FBgn0035321 Length:340 Species:Drosophila melanogaster
Sequence 2:NP_001023900.1 Gene:F39G3.5 / 178863 WormBaseID:WBGene00018210 Length:251 Species:Caenorhabditis elegans


Alignment Length:237 Identity:63/237 - (26%)
Similarity:105/237 - (44%) Gaps:15/237 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 FKVLYVLTQLCGLTMIVLVATWIGQHFGGLAGTSNPGVEFN---------WHPLFMTIGFIYLYG 160
            |.::..:|...|...|.|...::.....|||..|......|         .|...|.:.|||..|
 Worm    16 FDIILSITHFVGFITICLNGYFLNTFKNGLAWPSKVKNGDNKALGKRGDQLHAFLMILAFIYFQG 80

  Fly   161 NSILIYRGFRTTRKKTLKLTHAGIHMGAFILTVIALKTVFDSHNLANPPIPNMYSLHSWLGLSAV 225
            .::|.||.:|...|...||.|..:|:.|..|.:.||..:..|.|  |....|..|:|||:|:..:
 Worm    81 EALLAYRLYRYDAKIISKLLHTALHIIAIGLGITALTVIIMSTN--NAGWNNFTSVHSWIGICLL 143

  Fly   226 IVFSLQYVAGFVAFLAPGLRENYRIAMMPLHIYFGLFGFVLAIASALMGITEKAIFAIKTPAYST 290
            .|:.:|:..||:.:|.|.....||..:||:|...|:..|::|.....:|. ...:...:...:|.
 Worm   144 SVYLVQFSFGFLTYLCPCSPGKYRARLMPIHRAVGVGCFIVACVQCCLGY-GNILLEDQPGCFSD 207

  Fly   291 LPPAGVLANV--IGVMYVV-FGALVVYLATEPSYKRKPIPED 329
            |.....:..|  ..||::: :..||:.|.....::|:..|::
 Worm   208 LSCKNRIEYVGAFSVMFIILYTLLVLALIIPVPWRREKTPDE 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1275NP_647703.1 rne <5..103 CDD:236766
Cyt_b561_CG1275_like 120..336 CDD:176494 60/222 (27%)
F39G3.5NP_001023900.1 B561 66..193 CDD:214769 42/128 (33%)
Blue background indicates that the domain is not in the aligned region.

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