DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cnb and Shtn1

DIOPT Version :9

Sequence 1:NP_001261300.1 Gene:Cnb / 38258 FlyBaseID:FBgn0035295 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_001107784.1 Gene:Shtn1 / 71653 MGIID:1918903 Length:631 Species:Mus musculus


Alignment Length:648 Identity:129/648 - (19%)
Similarity:231/648 - (35%) Gaps:202/648 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 SSLNENKIISLSELWGKSSLTKTVLDNNSPNRPLCSSSLKEEQLRRQHLEKMVHTLQSHLLEYQ- 257
            :||.|..|....:|..::..||...|.....|......|:|.|.....:.:.|:.:|:| ||.: 
Mouse    14 TSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISHMVIEEVNFMQNH-LEIEK 77

  Fly   258 --------------------QRISV-------------AIEVDRSKDAALTE-AEQTVQSL--NY 286
                                :|||:             .|.:|....|..|: |.:|..|:  ..
Mouse    78 TCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINIDDDDPATDTDAAAETCVSVQCQK 142

  Fly   287 EVQHLRDAVHRLEADRGESQSRFDALQNELSQAVNLATRFQEKNDKLERE-------LDHCRQ-- 342
            :::.|||.:..::.::.......:.|:::|.:.:....:.:::...|..|       |:.|.:  
Mouse   143 QIKELRDQIVSVQEEKKVLAIELENLKSKLGEVMEEVNKVKQEKAVLNSEVLEQRKVLEKCNRVS 207

  Fly   343 --DAKQWEERLEQLEMQLNSSKRAEELSH---AELNKLR--------------------DKFAKV 382
              ..:::||....||::.:..|:||..:.   .|.|||:                    |:.||:
Mouse   208 MLAVEEYEELQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSSLPDQQLLKALDENAKL 272

  Fly   383 DYQ--------QEKLKARIEELE-----KENNTLTNQKEMLQEYHQKQKARADSLESHRKSLQET 434
            ..|        |:|:|...|.||     ||.:.|..|.|:|::..::       ||...:|.:|.
Mouse   273 IQQLEEERIQHQKKVKELEERLENEALHKEIHNLRQQLELLEDDKRE-------LEQKYQSSEEK 330

  Fly   435 LANLTETETNLKKKLDIQQKSL---------------------------------------KQYY 460
            ..||..:...|:|:::..:.|:                                       |...
Mouse   331 ARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSLMSMIRKRSHPSGNSAKKEKTTQ 395

  Fly   461 QQQMENVVAKKMQEFQDQLD--KNEEHLK---NEARERER----LIAERAVKQLEMINEKNNQEL 516
            .:..|.|...|.|..::.:|  |...||:   ..||.:.:    ..:|.||.:|:.|....|:..
Mouse   396 PETAEEVTDLKRQAVEEMMDRIKKGVHLRPVNQTARPKAKPDSLKGSESAVDELKGILGTLNKST 460

  Fly   517 NLIQEK----HNEEVELYRLQLANASKKIDEMDLKLSCYKTKRADIAEKLHGVMEAQWQQALAIL 577
            :....|    .|.|.||.|:.   ..:|:           |..||.:... |::.....:::.:|
Mouse   461 SSRSLKSLGPENSETELERIL---RRRKL-----------TAEADSSSPT-GILATSESKSMPVL 510

  Fly   578 TTPSQNSIIQSSDTEASESPELNNARMYPETPKSSKSQRS----NNTE----------------- 621
              .|.:|:.:|:..:.:...|.||.  .|.||:..:..|.    .|.:                 
Mouse   511 --GSVSSVTKSALNKKTLEAEFNNP--CPLTPEPGEGPRKLEGCTNPKVTFQPPSKGGYRRKCVG 571

  Fly   622 -KNNLDVVGKRDPPS---PMDKLQAYIELLLSKSPSDFDRLDEILAMTSKQGSKQSKPKSGSG 680
             :|..:.|...||.|   |..|.||     ..|.|:.|:         .:.|..|.:.|..||
Mouse   572 SENQAEPVVVLDPVSTHEPQTKDQA-----AEKDPTQFE---------EEGGETQPEYKEDSG 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CnbNP_001261300.1 TPR_MLP1_2 291..408 CDD:285204 34/163 (21%)
Tropomyosin 349..563 CDD:278679 62/301 (21%)
Fib_alpha <349..458 CDD:285864 35/183 (19%)
Shtn1NP_001107784.1 DUF972 141..>189 CDD:283750 5/47 (11%)
Rod_C <215..>306 CDD:287465 23/90 (26%)
Tmemb_cc2 <268..350 CDD:287269 23/88 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 343..404 5/60 (8%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 417..508 22/105 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 530..631 24/107 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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