DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dbx and hoxc6b

DIOPT Version :10

Sequence 1:NP_647677.2 Gene:Dbx / 38254 FlyBaseID:FBgn0261723 Length:741 Species:Drosophila melanogaster
Sequence 2:XP_073772180.1 Gene:hoxc6b / 58045 ZFINID:ZDB-GENE-000822-1 Length:228 Species:Danio rerio


Alignment Length:157 Identity:47/157 - (29%)
Similarity:66/157 - (42%) Gaps:39/157 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   383 PFLPHTLN------HPHLH---------SLLAHCRNPY------------MSVGAQVFPLPPGQG 420
            ||..|..|      .|:.:         .:|..||..:            ...|..:.|....|.
Zfish    53 PFYSHQENVMFGSSRPYEYGSNMFYQDKDVLPSCRQGFGQTQGSLTQDYASDQGKTMEPKGSVQI 117

  Fly   421 FPW-----AHSTRG---KPRRGMMRRAVFSDSQRKGLEKRFQQQKYISKPDRKKLAERLGLKDSQ 477
            :||     :||..|   ..|||   |.::|..|...|||.|...:|:::..|.::|..|.|.:.|
Zfish   118 YPWMQRMNSHSGVGYGSDRRRG---RQIYSRYQTLELEKEFHYNRYLTRRRRIEIANTLCLSERQ 179

  Fly   478 VKIWFQNRRMKW-RNSKERELLASGGS 503
            :||||||||||| :.|....:|...||
Zfish   180 IKIWFQNRRMKWKKESNLTSILNDNGS 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DbxNP_647677.2 Homeodomain 437..491 CDD:459649 24/54 (44%)
hoxc6bXP_073772180.1 None

Return to query results.
Submit another query.