DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dbx and Hmx3

DIOPT Version :10

Sequence 1:NP_647677.2 Gene:Dbx / 38254 FlyBaseID:FBgn0261723 Length:741 Species:Drosophila melanogaster
Sequence 2:NP_001099772.1 Gene:Hmx3 / 293537 RGDID:1559927 Length:356 Species:Rattus norvegicus


Alignment Length:450 Identity:105/450 - (23%)
Similarity:136/450 - (30%) Gaps:177/450 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 SHPQHQPLAVPGHQHSHPHSHHH----HHHHP------------------------------GA- 236
            |.|..||...|......|.|..:    .||.|                              || 
  Rat    13 SAPPPQPPPQPPAPKESPFSIRNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAAAAAAAAAKGAL 77

  Fly   237 -GHAHFP-----HPAFLTHQLPPHQHHQQQQHVQQQHP------------GNSCQPQTASSS--- 280
             |.|.|.     ..||...::|. |......|..::.|            |:..:|:.:..:   
  Rat    78 EGAAGFALSQVGDLAFPRFEIPA-QRFALPAHYLERSPAWWYPYTLTPAGGHLPRPEASEKALLR 141

  Fly   281 -SSPGSTISDSDNNHGASTANGNGSGTGNSGQD----ARP--HELANSNPDEDSSASRRLTQDKQ 338
             |||                   .|||.....|    |.|  .||.:.:|||.........:.|:
  Rat   142 DSSP-------------------ASGTDRDSPDPLLKADPDHKELDSKSPDEIILEESDSEEGKK 187

  Fly   339 QQQQLLGAGGTGGGGGGGHGHGHPTPPPPPPPPVIAKPMPSRPTPFLPHTLNHPHLHSLLAHCRN 403
            :.:.:.||.||                                                      
  Rat   188 EGEAVPGAAGT------------------------------------------------------ 198

  Fly   404 PYMSVGAQVFPLPPGQGFPW---AHSTRGKPR-RGMMRRAVFSDSQRKGLEKRFQQQKYISKPDR 464
               :|||..  ..||.. .|   |.|...||. |....|.|||.||...||..|..::|:|..:|
  Rat   199 ---TVGATA--ATPGSE-DWKAGADSPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSER 257

  Fly   465 KKLAERLGLKDSQVKIWFQNRRMKWRNSKERELLASGGSRDQTLPNKNNPNPDLSDAKCDRPLTP 529
            ..||..|.|.::||||||||||.||:.....||.|:                :||.|...|.:. 
  Rat   258 AGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA----------------NLSHAAAQRIVR- 305

  Fly   530 LSPSLLSPNGSATPPPPGAVAKDEPPTAAVTPKSPQSVSSRSSP-SVGYGLQISSPPPLL 588
             .|.|...|.:|    .||.|....|.       |.|....:.| .|.|...:.|..|||
  Rat   306 -VPILYHENSAA----EGAAAAAGAPV-------PVSQPLLTFPHPVYYSHPVVSSVPLL 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DbxNP_647677.2 Homeodomain 437..491 CDD:459649 28/53 (53%)
Hmx3NP_001099772.1 Homeodomain 228..284 CDD:459649 28/55 (51%)

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