DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dbx and Hoxc4

DIOPT Version :10

Sequence 1:NP_647677.2 Gene:Dbx / 38254 FlyBaseID:FBgn0261723 Length:741 Species:Drosophila melanogaster
Sequence 2:NP_001103354.1 Gene:Hoxc4 / 24459 RGDID:1586210 Length:264 Species:Rattus norvegicus


Alignment Length:402 Identity:79/402 - (19%)
Similarity:126/402 - (31%) Gaps:183/402 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 YLQQNFMQQHSHQYQQHHQQQQPHSHPQHQPLAVPGHQHSHPHSHHHHHHHPGAGHAHFPHPAFL 247
            |.|.:::.:||.:|.                    |........|||...:|..           
  Rat    23 YSQNSYIPEHSPEYY--------------------GRTRESGFQHHHQELYPPP----------- 56

  Fly   248 THQLPPHQHHQQQQHVQQQHPGNSCQPQTASSSSSPGSTISDSDNNHGASTANGNGSGTGNSGQD 312
                ||...:.::|:        ||     :|...||:           |.|:|           
  Rat    57 ----PPRPSYPERQY--------SC-----TSLQGPGN-----------SRAHG----------- 82

  Fly   313 ARPHELANSNPDEDSSASRRLTQDKQQQQQLLGAGGTGGGGGGGHGHGHPTPPPPPPPPVIAKPM 377
              |.:..:.:|::        :|...:...|.||..:                |.|.||..::|.
  Rat    83 --PAQAGHHHPEK--------SQPLCEPAPLSGASAS----------------PSPAPPACSQPA 121

  Fly   378 PSRPTPFLPHTLNHPHLHSLLAHCRNPYMSVGAQVFPLPPGQGFPWAHSTR----------GKPR 432
            |..|:.               |..:.|.:              :||.....          |:|:
  Rat   122 PDHPSS---------------AASKQPIV--------------YPWMKKIHVSTVNPNYNGGEPK 157

  Fly   433 RGMMRRAVFSDSQRKGLEKRFQQQKYISKPDRKKLAERLGLKDSQVKIWFQNRRMKWRNSKEREL 497
            |.   |..::..|...|||.|...:|:::..|.::|..|.|.:.|:|||||||||||:       
  Rat   158 RS---RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWK------- 212

  Fly   498 LASGGSRDQTLPNKNNPNPDLSDAKCDRPLTPLSPSLLSPNGSATPPPPGAVAKDEPPT-AAVTP 561
                  :|..|||..                           ..:.||.||.    |.| :|.||
  Rat   213 ------KDHRLPNTK---------------------------VRSAPPAGAA----PSTLSAATP 240

  Fly   562 KSPQSVSSRSSP 573
            .:.:..|..::|
  Rat   241 GTSEDHSQSATP 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DbxNP_647677.2 Homeodomain 437..491 CDD:459649 23/53 (43%)
Hoxc4NP_001103354.1 Homeodomain 157..213 CDD:459649 24/71 (34%)

Return to query results.
Submit another query.