DRSC/TRiP Functional Genomics Resources

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Protein Alignment dsb and scarb1

DIOPT Version :9

Sequence 1:NP_001097477.1 Gene:dsb / 38252 FlyBaseID:FBgn0035290 Length:615 Species:Drosophila melanogaster
Sequence 2:XP_017213428.1 Gene:scarb1 / 387260 ZFINID:ZDB-GENE-031126-1 Length:511 Species:Danio rerio


Alignment Length:469 Identity:134/469 - (28%)
Similarity:234/469 - (49%) Gaps:22/469 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 ISNNRLAVI--IIGIITLILGIILSSMP--WLDYFILKNLRL--WNDTLSYHYWQRPGVIRLTKL 133
            :|...::::  ::|.:.|:.|.:|..:.  .:|..|:||:.:  .|| |||..|:...|.....:
Zfish     2 VSQTTVSIVFLVLGGMALLFGTVLVFVGPIIIDDQIVKNVEINPKND-LSYTMWKDIPVPFFMSV 65

  Fly   134 YIYNVTNPDGFLRGEKPHLQEVGPFVYREDMQKVNVKFHENNYTVSYQHKKILQFVPELSI-DKD 197
            |.:::.|||..|:||:|.:.:.||:||||:..|.|:.||| |:||||:..:...|...:|: |:.
Zfish    66 YFFHIVNPDEILKGERPMVIQRGPYVYRENRWKDNITFHE-NHTVSYKEYRQYFFEESMSVGDES 129

  Fly   198 TPITTPNIPLLTLTSLSPKLGYLLSKTISVVVTAAQFKPFINVTAEQLAFGYDDALVSLAHRFYP 262
            ..:|.||:.:|..:.:...:.:.:...:|.........||:.....:|.:|||..||...:::.|
Zfish   130 DVVTIPNMLVLGASVMMENMPFPVRLLLSTTFKTFNEGPFLTKPVGELMWGYDSKLVDFLNKYLP 194

  Fly   263 KHMRPMERMGLLLGRNGTLTEVSSVKTGMDSMDQFGYIDQLNGLDHLPHWSEPPCTSIAGSEGSF 327
            ..:....:.||....|.:.|.:.::.||.|.:.:...:|..|||.::.:|....|..|.|:.|..
Zfish   195 GMLPSSGKFGLFADFNNSNTGLFTIFTGRDDIRKVHMVDSWNGLKNVDYWRSDQCNMINGTAGQM 259

  Fly   328 FPPRELTKSEVVHIYDKDLCRIIPLKYVESLEKDGIAADLFRLPNNSYGDSAHNPENK----CYD 388
            :|| .:||...:..|..|.||.:.|.|...|...||....:..|...:.:.|..|.|:    |..
Zfish   260 WPP-FMTKETTMPFYSPDACRSMELVYQRPLVSSGIPVYRYVSPKTLFANGADFPPNEGFCPCRQ 323

  Fly   389 TSEYEPIQGLQNISPCQYGAPVYISNPHFFESHPDLLNSVEGLKPEREKHETYFKIQPKLGVPLE 453
            :       ||.|:|.|::|:|.:||.|||:.:.|.||::|.||.|..::|..:..|.|:.|||:.
Zfish   324 S-------GLLNVSSCRHGSPTFISQPHFYNADPQLLDTVSGLSPSEDEHGLFIDIHPETGVPVN 381

  Fly   454 GKVRIQLNLKVTRAKDVYPVRDFRDFVFPVMWLEEGISELTPAIKRWIYLGTVIAPSAVPIGSYL 518
            ..||:||||.:.:...:....:..:.|.|::|.||. ..:...:........|:.|..:....|:
Zfish   382 VSVRLQLNLFLKKVSGISETGNIAEVVMPMLWFEES-GYIDGPVLHTFRTNLVVLPKVMEYMQYI 445

  Fly   519 MILGGAFAIIFSFV 532
            .|..|..||:.:.:
Zfish   446 FIALGLAAILTAVI 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsbNP_001097477.1 CD36 103..532 CDD:279474 129/435 (30%)
scarb1XP_017213428.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582137
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45589
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 1 1.000 - - FOG0000618
OrthoInspector 1 1.000 - - mtm6350
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.960

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