DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dre4 and SPT16

DIOPT Version :10

Sequence 1:NP_476610.2 Gene:dre4 / 38248 FlyBaseID:FBgn0002183 Length:1122 Species:Drosophila melanogaster
Sequence 2:NP_192809.1 Gene:SPT16 / 826665 AraportID:AT4G10710 Length:1074 Species:Arabidopsis thaliana


Alignment Length:1099 Identity:390/1099 - (35%)
Similarity:616/1099 - (56%) Gaps:81/1099 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SSFVLDKEAFVRRVKRLYTEWRAPSI---GHDDALRNLDCIMSIVGVEEDVMYSKSMALQLWLLG 63
            :::.:|.:.|:.|.:.||..|:..|.   |..|||     .::.....:|:.|.||.||.:||||
plant    22 NTYSIDVKNFISRARALYEHWKKHSADLWGSADAL-----AIATPPASDDLRYLKSSALNIWLLG 81

  Fly    64 YELTDTISVFCSDAVYFLTSKKKIEFLKQTQNITEEGFP-EINLLVRDRTDKDQGNFEKLIKALQ 127
            ||..|||.||....::||.|:.|...|:..:....:... ::.:.|:.:.|...|..:.:.:|::
plant    82 YEFPDTIMVFTKKQIHFLCSRNKASLLEVVKKPAHDELKLDVIMHVKPKGDDGTGLMDAIFRAIR 146

  Fly   128 NSKKG-----KRLGVFAKDAYPGEFSEAWKKSLTASKFEHVDISTIIAYLMCPKDESEINNIRKA 187
            :..:|     :.:|..|::|..|:..|.|.:.|..:.|:.|||:..::.|...||::|:.:::||
plant   147 DLSRGDGNDSQVVGHIAREAPEGKLLETWTERLKNANFQFVDITGGLSDLFAVKDDTEVMSVKKA 211

  Fly   188 SLVSMDIFNKYLKDEIMDIIDSDRKVKHNKLSDGCEAAIGE-KKYTSGLDPRLLDMAYPPIIQSG 251
            :.::..:....:...:...||.::.|.|:.|.|..|.||.| .|.:..|.|..:|:.||||.|||
plant   212 AYLAYSVMKNVVVPNLESAIDEEKDVTHSALMDLTEKAILEPTKASVKLKPENVDICYPPIFQSG 276

  Fly   252 GAYSLKFSAVADKNPLHF---GVIVCSLGARYKSYCSNISRTFLVNPTEAMQENYTFLVSVQEEI 313
            |.:.||.||.::...|.:   .:|:|::||||.|||||::||:|::.|....:.|..|:...|..
plant   277 GKFDLKPSAASNDELLTYDPASIIICAVGARYNSYCSNVARTYLIDATSLQSKAYEVLLKAHEAA 341

  Fly   314 LKLLVPGTKLCDVYEKTLDFVKKEKPSMVDNLPKSFGFAMGLEFRENSIVIGPKCQALLKKNMVF 378
            :..|..|.|:..||:..|..|:|..|..||.|.||.|..:||||||:.:.|..|...:|:..|.|
plant   342 IDALRSGRKINTVYQAALSVVEKNAPEFVDKLTKSAGTGIGLEFRESGLNINAKNDKVLRPKMAF 406

  Fly   379 NLHVGISNLTNPEATDKEGKNYALFIGDTVLVGEQSPASVMTPSKKKIKNVGIFIKDDSDEEDVD 443
            |:.:|..||.....:..:.|.::|.:.|||||.:|.| .::|...|.:|:|....|:|.:||  .
plant   407 NVSLGFQNLECESESRSKNKKFSLLLADTVLVTDQKP-ELLTKCSKSVKDVAYSFKEDEEEE--K 468

  Fly   444 DKKTAKEDQGTEILGRSKRNAVLESKLRNE---INTEEKRKEHQRELAQQLNERAKDRLARQ--- 502
            .:|.|: ..|:|       |.:.::.||::   ::.||.||:||.|||:|.||....|||..   
plant   469 PRKKAR-TSGSE-------NYITKTALRSDDHVVSKEELRKQHQAELARQKNEETARRLAGDSSG 525

  Fly   503 -GNSKEVEKVRKNTVSYKSISQMPREPEVKELKLYVDKKYETVIMPVFGIQVPFHISTIKNISQS 566
             |:|:...|...:.|:||:::.||.    |||.:.||.:.|.|::|::|..||||::||:.:|.:
plant   526 AGDSRSTAKTSADVVAYKNVNDMPH----KELMIQVDTRNEAVLLPIYGSLVPFHVATIRTVSGN 586

  Fly   567 VE-GEYTYLRINFFHPGATMGRNEGGLYPQPEATFVKEVTYRSSNVKEHGEVGAPSANLNNAFRL 630
            .: ....|:||.|..||.....::........|.::|||::|:.:.:...||          .:.
plant   587 QDTNRNCYIRIIFNVPGTPFNPHDSNSLKNQGAIYLKEVSFRTKDSRHSSEV----------TQQ 641

  Fly   631 IKEVQKRFKTREAEEREKEDLVKQDTLILSQNKGNP-KLKDLYIRPNIV-TKRMTGSLEAHSNGF 693
            ||.::::...||:|..|:..||.|:.|.|:.||..| :|.:|:|||... .|::.|:||||:|||
plant   642 IKTLRRQVMARESERAERATLVTQEKLQLAGNKFKPLRLSELWIRPPFSGRKKIPGTLEAHANGF 706

  Fly   694 RYISVRGD-KVDILYNNIKSAFFQPCDGEMIILLHFHLKYAIMFGKKKHVDVQFYTEVGEITTDL 757
            ||.:.|.| :||:|:.|||.|||||.:.|||.||||||...||.|.||..|||||.||.::...|
plant   707 RYSTTRPDERVDVLFANIKHAFFQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSL 771

  Fly   758 -GKHQHMHDRDDLAAEQAERELRHKLKTAFKSFCEKVETM------TKSVVEFDTPFRELGFPGA 815
             |..:..:|.|::..||.||:.::|:...|..|..:|..|      ....:|||.|.|||||.|.
plant   772 GGGRRSAYDPDEIDEEQRERDRKNKINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFHGV 836

  Fly   816 PFRSTVTLQPTSGSLVNLTEWPPFVITLDDVELVHFERVQFHLRNFDMIFVFKEYNKKVAMVNAI 880
            |.:::..:.|||..||.|.|:|..|::|.::|:|:.|||.|..:||||..:||::.|.|..|:::
plant   837 PHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKDVLRVDSV 901

  Fly   881 PMNMLDHVKEWLNSCDIRYSEGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGENETAE 945
            |.:.|:.:||||::.||:|.|...:|||::|:|||||||:.|.:.|||.||:.: ||:.|:..:|
plant   902 PTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQSFIDDGGWEFLNLD-GSDSESGGSE 965

  Fly   946 SEEDEAYNPTDAESDEESDEDSEYSEA---SEDSEESDEDLGSDEESGKDWSDLEREAAEEDRNH 1007
             |.|:.|.|:|.|.:.||::::..||:   |:|.||.|.:..|:||.||.|.:|||||...||.|
plant   966 -ESDKGYEPSDVEVESESEDEASESESLVESDDDEEEDSEQESEEEKGKTWDELEREATNADREH 1029

  Fly  1008 DYAADDKPRNGKFDSKKHGKSSKHSRRDREEARSSSHSKKHKSNSSSSSSHLKSSSSKH 1066
            ...:|               |.:..:|.:.:|...|.........|||..::..|..||
plant  1030 GVESD---------------SEEERKRRKMKAFGKSRPGTSGGGGSSSMKNMPPSKRKH 1073

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dre4NP_476610.2 COG5406 1..1005 CDD:227693 376/1036 (36%)
SPT16NP_192809.1 COG5406 24..1027 CDD:227693 376/1034 (36%)

Return to query results.
Submit another query.