DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12020 and gsdme

DIOPT Version :10

Sequence 1:NP_647662.1 Gene:CG12020 / 38233 FlyBaseID:FBgn0035273 Length:366 Species:Drosophila melanogaster
Sequence 2:XP_002933445.2 Gene:gsdme / 100486029 XenbaseID:XB-GENE-983245 Length:514 Species:Xenopus tropicalis


Alignment Length:41 Identity:12/41 - (29%)
Similarity:15/41 - (36%) Gaps:20/41 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 AFD--------VLGNDLYRAIYDRFGEAGLFEGVMLPNGYF 105
            |||        :..|.||.:.||            :|||.|
 Frog   366 AFDELMPSQRIIAENILYLSGYD------------MPNGKF 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12020NP_647662.1 PRK14289 7..299 CDD:237660 12/41 (29%)
DnaJ_C 156..335 CDD:199909
gsdmeXP_002933445.2 Gasdermin 14..260 CDD:398339
Gasdermin_C 315..480 CDD:407590 12/41 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.