DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2021 and lsm1

DIOPT Version :10

Sequence 1:NP_647660.1 Gene:CG2021 / 38229 FlyBaseID:FBgn0035271 Length:95 Species:Drosophila melanogaster
Sequence 2:NP_001003551.1 Gene:lsm1 / 445157 ZFINID:ZDB-GENE-040801-68 Length:133 Species:Danio rerio


Alignment Length:86 Identity:26/86 - (30%)
Similarity:42/86 - (48%) Gaps:10/86 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSGLESYI-----NHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHI 60
            |.|..|.|     .|.|  :..|||..||.|:..||..|:::.:..||: ........|..|:.:
Zfish     4 MPGTASLIEDIDKKHLV--LLRDGRTLIGILRSIDQFANLVLHQTVERI-HVGKKFGDIPRGIFV 65

  Fly    61 IRGDNIAVIGLIDETIDSRLD 81
            :||:|:.::|.:|  :|...|
Zfish    66 VRGENVVLLGEVD--LDKECD 84

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2021NP_647660.1 LSm8 1..91 CDD:212474 26/86 (30%)
lsm1NP_001003551.1 LSm1 4..77 CDD:212475 23/75 (31%)

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