DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2021 and lsm6

DIOPT Version :10

Sequence 1:NP_647660.1 Gene:CG2021 / 38229 FlyBaseID:FBgn0035271 Length:95 Species:Drosophila melanogaster
Sequence 2:XP_005160025.1 Gene:lsm6 / 415167 ZFINID:ZDB-GENE-040625-50 Length:90 Species:Danio rerio


Alignment Length:66 Identity:17/66 - (25%)
Similarity:30/66 - (45%) Gaps:4/66 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIRGDNIAV 68
            |:..|...|.:....|.::.|.|...|..:||.:::..|.|    :|..:...|...:||:|:..
Zfish    22 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYV----NGQLKNKYGDAFLRGNNVLY 82

  Fly    69 I 69
            |
Zfish    83 I 83

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2021NP_647660.1 LSm8 1..91 CDD:212474 17/66 (26%)
lsm6XP_005160025.1 LSm6 17..84 CDD:212473 17/66 (26%)

Return to query results.
Submit another query.