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Protein Alignment CG2021 and lsm-1
DIOPT Version :9
Sequence 1: | NP_647660.1 |
Gene: | CG2021 / 38229 |
FlyBaseID: | FBgn0035271 |
Length: | 95 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_496385.1 |
Gene: | lsm-1 / 174700 |
WormBaseID: | WBGene00003076 |
Length: | 125 |
Species: | Caenorhabditis elegans |
Alignment Length: | 71 |
Identity: | 25/71 - (35%) |
Similarity: | 41/71 - (57%) |
Gaps: | 9/71 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 14 IITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVL----GLHIIRGDNIAVIGLIDE 74
::..|||..||.|:..||..|:|:::..||.| :|:... |..:|||:|:.:.|.||:
Worm 24 VVLRDGRKLIGFLRSIDQFANLILEDVVERTF-----VEKYFCETGQGFMLIRGENVELAGEIDD 83
Fly 75 TIDSRL 80
||::.|
Worm 84 TIETGL 89
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
CG2021 | NP_647660.1 |
LSm8 |
1..91 |
CDD:212474 |
25/71 (35%) |
lsm-1 | NP_496385.1 |
LSm1 |
8..81 |
CDD:212475 |
20/61 (33%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.910 |
|
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