DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8001 and Dcaf8

DIOPT Version :9

Sequence 1:NP_001261283.1 Gene:CG8001 / 38224 FlyBaseID:FBgn0035268 Length:748 Species:Drosophila melanogaster
Sequence 2:NP_001014253.1 Gene:Dcaf8 / 364050 RGDID:1308513 Length:591 Species:Rattus norvegicus


Alignment Length:632 Identity:218/632 - (34%)
Similarity:318/632 - (50%) Gaps:97/632 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 PTRSYRRISIELVGSYSDTSDSEEHELEEGTE-------HAEEYS------DDAPEPHIAES--- 210
            |:...||   :|......:|..|....|||.|       .|.:.|      |..|.....||   
  Rat     6 PSTDGRR---DLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTSTESRGT 67

  Fly   211 -------ADDSSSNDDMGPYSLSSEDETTTEVENLQDEVEFNE-------------DINPADREK 255
                   ..||.|.:|.|.||::.|:    .|....||.|..|             |.:.:|.|:
  Rat    68 DTESSGEEKDSDSMEDTGHYSINDEN----RVHGHSDEEEEEEQPRHRVQRKRASRDQDSSDDER 128

  Fly   256 V--DYAVNQVMCKCKPKYTWNYDQELLQREHNIINRIDWRGGHTSASSFGQGYYGSRQVVEQMTL 318
            .  |:..::.....:|:  |.....|.:||..            |::.|.....|:|..|::..|
  Rat   129 ALEDWVSSETTALPRPR--WQALPALRERELG------------SSARFVYEACGARVFVQRFRL 179

  Fly   319 LSSLNVHHGCVNSLNFNRAGDLICSGSDDLTIVVWDWAKEKQLHRFRSGHNMNIFQTKFIDSAGC 383
            ...|..|.||||:|:||:.|..:.||||||.:|||||.:.:.:..|.|||..|:||.||:.::|.
  Rat   180 QHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGD 244

  Fly   384 LDIVSSSRDGQVRRSVIPPSGGVIKPIRLYTHSESVHKIIVVPHSRHELMSAGEDAAVKHFDLRA 448
            ..:...:||||||.:.:..:.......|:..|..:.||:.:.|.|....:||||||.|...|||.
  Rat   245 STLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQ 309

  Fly   449 SNAATTMMRCVYNDENERGRVRLFSIAHHP-YAPEFCVSGSDDILRVYDKRNLAK-----AIHQM 507
            ...|:   :.|...|.|: :|.|::|..:| ...:|.|.|.|..:|:||:|.:.:     .:.:.
  Rat   310 DRPAS---KLVVTKEKEK-KVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKF 370

  Fly   508 APRNLLEAQI-TQITCAVYNHSGSEILASYSDAGIYLFDSRNYNRGDYLHCYKGHINSRTIKGVN 571
            .|.:|:.::. ..|||.||:|.|:|:||||:|..||||:|.:.:...|:..||||.|:.|:||||
  Rat   371 CPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVN 435

  Fly   572 FFGPRSEYIVSGSDCGNIFFWDKNTEAIINYMKGDHVGVVNCLEPHPWMPVLATSGLEHDVKIWT 636
            |:||:||::|||||||:||.|:|::..||.:|:||..||||||||||.:||||||||:||||||.
  Rat   436 FYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWA 500

  Fly   637 PQGPERKLPEDLLKQTLQRNFRCNIVESI---DLDINNFQYFIRGFLQGSGASHLRQRHTSSLGH 698
            |.. |.......||..:::|.|....:|:   ||..::..:|:        ..|||||       
  Rat   501 PTA-EASTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFL--------MHHLRQR------- 549

  Fly   699 QMRDNSSSRSNGSNASNPTSHRRNSNSSDDTNDEGADADAALDTLHC 745
              |.:...|..|..|::..|.  .|.||.||:||    :...|.:.|
  Rat   550 --RHHRRWREPGVGATDADSD--ESPSSSDTSDE----EEGPDRVQC 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8001NP_001261283.1 WD40 <317..653 CDD:225201 150/342 (44%)
WD40 318..635 CDD:295369 144/323 (45%)
WD40 repeat 331..367 CDD:293791 16/35 (46%)
WD40 repeat 373..414 CDD:293791 12/40 (30%)
WD40 repeat 419..462 CDD:293791 16/42 (38%)
WD40 repeat 472..513 CDD:293791 11/46 (24%)
WD40 repeat 520..559 CDD:293791 19/38 (50%)
WD40 repeat 567..594 CDD:293791 19/26 (73%)
WD40 repeat 611..657 CDD:293791 26/45 (58%)
Dcaf8NP_001014253.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..140 33/140 (24%)
Nuclear export signal. /evidence=ECO:0000250|UniProtKB:Q5TAQ9 39..50 2/10 (20%)
WD40 183..500 CDD:295369 144/320 (45%)
WD40 183..>499 CDD:225201 143/319 (45%)
WD 1 185..224 20/38 (53%)
WD40 repeat 192..228 CDD:293791 16/35 (46%)
WD 2 228..269 14/40 (35%)
WD40 repeat 234..275 CDD:293791 12/40 (30%)
WD 3 275..315 16/42 (38%)
WD40 repeat 280..321 CDD:293791 16/43 (37%)
WD 4 323..363 13/40 (33%)
WD40 repeat 329..377 CDD:293791 12/47 (26%)
WD 5 379..418 18/38 (47%)
WD40 repeat 384..423 CDD:293791 19/38 (50%)
WD 6 426..466 24/39 (62%)
WD40 repeat 431..468 CDD:293791 22/36 (61%)
WD 7 470..509 27/39 (69%)
WD40 repeat 475..499 CDD:293791 20/23 (87%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 552..591 13/43 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340323
Domainoid 1 1.000 116 1.000 Domainoid score I5857
eggNOG 1 0.900 - - E1_KOG1334
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 310 1.000 Inparanoid score I2522
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1270484at2759
OrthoFinder 1 1.000 - - FOG0003170
OrthoInspector 1 1.000 - - oto96977
orthoMCL 1 0.900 - - OOG6_103613
Panther 1 1.100 - - LDO PTHR15574
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2134
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.760

Return to query results.
Submit another query.