DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gk2 and ygcE

DIOPT Version :9

Sequence 1:NP_001286904.1 Gene:Gk2 / 38221 FlyBaseID:FBgn0035266 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_417256.1 Gene:ygcE / 946193 ECOCYCID:G7442 Length:492 Species:Escherichia coli


Alignment Length:569 Identity:115/569 - (20%)
Similarity:188/569 - (33%) Gaps:181/569 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 LVGVIDEGTKTIGFSIYT-----------------TPDFKEIAAHRVELSVITPQDGWYEQDPLE 79
            ::| ||.|:::....:|.                 ||| .:.|.|        |.|        :
E. coli     6 IIG-IDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPD-ADTAEH--------PDD--------D 52

  Fly    80 MMASINKCAEEAIKQLPEQGFSASDIVTVGITNQRETTIVWDAVTGKPLYNALLWKDIRTSTTVE 144
            :.||:.....:.:.|.   ..:..|||.:|:.:.|....:..| .|.|....:.|:|.|.:...|
E. coli    53 LWASLCFAGHDLMSQF---AGNKEDIVGIGLGSIRCCRALLKA-DGTPAAPLISWQDARVTRPYE 113

  Fly   145 QIVAKVQDPNHFRSSTGLPISTYFSALKIRWLRDNVPEVRQAIRERRCKAGTVDSWIVWNLTNGA 209
            .....|.....|        |.|.:.......:||:             |.....|.|       
E. coli   114 HTNPDVAYVTSF--------SGYLTHRLTGEFKDNI-------------ANYFGQWPV------- 150

  Fly   210 LHITDVTNASRTLLMNLETQAW--DPVLLKTFGIREEMLPTIHSCSEIFGKITSERSPLRGMTLS 272
                           :.::.||  |..::..|.|...||..:.....:.|.||            
E. coli   151 ---------------DYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHIT------------ 188

  Fly   273 GIMGNQQASLLGQMCVKPGQTKNTYRSGCFLLCNTGDKPVFS-RHGLL--TTVAYKLG------- 327
                 .||:|           ...:.:|..::|.|.||||.: ..|||  .|....||       
E. coli   189 -----PQAAL-----------ATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMM 237

  Fly   328 -----PQAPTIY-----AIEGAVSVAGHAL-------SWLQNKV--RILPDSRDAE--------K 365
                 |:.|..|     :|...:...|:.:       |||::.:  .::.|:|..:        |
E. coli   238 NGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNK 302

  Fly   366 YAEMVPTSGDVYFVPAFTGLYAPY------WRQNARGIIIGLTQFTRKNHIVRAALESICFQTRD 424
            .|..||        |...||....      |....|||:||.........|.|:.|||:....::
E. coli   303 KASCVP--------PGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKN 359

  Fly   425 ILECMHQECGYEINKLHADGKLTTNNLLMQLQADTIGMPVFRSQLMDSTAFGAAMCAAQADGV-- 487
            ..:.|..|..:....:...|..:.::|.||:.||...:|..|:.:....:.|||:..|...|:  
E. coli   360 NYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYP 424

  Fly   488 -------NLCQ-------FEPEKRYYENVHYDTF--LATTTDVERKERY 520
                   |:.:       .|...:.|:.::...|  |...|||..|:.|
E. coli   425 DYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSY 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gk2NP_001286904.1 glycerol_kin 31..533 CDD:273549 115/569 (20%)
FGGY_GK1-3_metazoa 31..533 CDD:212664 115/569 (20%)
ygcENP_417256.1 NBD_sugar-kinase_HSP70_actin 5..452 CDD:418402 108/546 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001035
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
21.910

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