DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gk2 and Atad2

DIOPT Version :9

Sequence 1:NP_001286904.1 Gene:Gk2 / 38221 FlyBaseID:FBgn0035266 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_001128351.1 Gene:Atad2 / 314993 RGDID:1304849 Length:1373 Species:Rattus norvegicus


Alignment Length:636 Identity:120/636 - (18%)
Similarity:186/636 - (29%) Gaps:245/636 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 KELRKQSLIQHTGLVGVIDEGTKTIGFSIYTTPDFKEIAAHRVELSVITPQDGWYEQDPLEMMAS 83
            |::|:|.:.:...| ||.:| |:....::||..  |..|..:.:......|||..|.        
  Rat   194 KKMRRQRMKKLEDL-GVFNE-TEESNLTMYTRG--KRKAIQQADEETTDNQDGSVES-------- 246

  Fly    84 INKCAEEAIKQLPEQGFSASDIVTVG-----------ITNQRETTIVWDAVTGKPLYNALLWKDI 137
                :||..:|..:.|....|.....           ...||:.|:.:.|...||.:.       
  Rat   247 ----SEEGEEQEDDDGEDEEDDEDEEEDGEEDNQKRYYLRQRKATVYYQAPLEKPRHQ------- 300

  Fly   138 RTSTTVEQIVAKVQDPNHFRSSTGLPISTYFSALKIRWLRDNVPEVRQAIRERRCKAGTVDSWIV 202
                         :.||.|.|....|....:.      |..:.|      |...||.        
  Rat   301 -------------RKPNMFYSGPASPARPRYR------LSSSGP------RSPYCKR-------- 332

  Fly   203 WNLTNGALHITDVTNAS---------------------RTLLMNLETQA---------------- 230
            .|....|:|.:|.|::|                     |.|.:|.....                
  Rat   333 MNRRRHAIHSSDSTSSSSSSEDECFERRRKRNRNRAINRCLPLNFRKDEIRGIYKDRMKIGANLA 397

  Fly   231 -WDPVLLKT--------------FGIREEML-PTIHSCSEIFGKITSERSPLRGMTLSGIMGNQQ 279
             .||:.|.:              ..::|.:| |.::  .|:|.|...:  |.||....|      
  Rat   398 DVDPMQLDSSVRFDSVGGLSSHIAALKEMVLFPLLY--PEVFEKFKIQ--PPRGCLFYG------ 452

  Fly   280 ASLLGQMCVKPGQTKNTYRSGCFLLCNTGDKPV--FSRHG----------------LLTTVAYKL 326
                     .||..|..........|:.|||.|  |.|.|                ||...||::
  Rat   453 ---------PPGTGKTLVARALANECSRGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQM 508

  Fly   327 GPQAPTIYAIEGAVSVAGHALSWLQNKVRILPDSRDAEKYAEMVPTSGDVYFVPAFTGLYAPYWR 391
            .|.......|:|...|.               .||..:.::.:|.|     .:....||      
  Rat   509 RPAIIFFDEIDGLAPVR---------------SSRQDQIHSSIVST-----LLALMDGL------ 547

  Fly   392 QNARG--IIIGLTQ--------FTRKNHIVR----------AALESICFQTRD--------ILEC 428
             ::||  ::||.|.        ..|.....|          |..|.:...|||        .||.
  Rat   548 -DSRGEIVVIGATNRLDSIDPALRRPGRFDREFLFSLPDKDARKEILKIHTRDWNPKPVDMFLEE 611

  Fly   429 MHQE----CGYEINKLHADGKL------------TTNNLLMQLQADTIGMPVFRSQLMD------ 471
            :.:.    ||.:|..:.|:..|            |:..|.:.|.:..|....|.:.:..      
  Rat   612 LAENCVGYCGADIKSICAEAALCALRRRYPQIYTTSEKLQLDLSSINISAKDFETAMQKIIPASQ 676

  Fly   472 --STAFGAAMCAAQADGVNLCQ------FEPEKRYYENVHYDTFLATTTDV 514
              .|:.|.|:.|....   |.|      .|..::.:.:|...|..|..:||
  Rat   677 RAVTSPGQALSAIVKP---LLQNTVHMILEALQKVFPHVEVGTNKALNSDV 724

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gk2NP_001286904.1 glycerol_kin 31..533 CDD:273549 117/624 (19%)
FGGY_GK1-3_metazoa 31..533 CDD:212664 117/624 (19%)
Atad2NP_001128351.1 AAA 444..585 CDD:214640 36/182 (20%)
AAA 449..583 CDD:278434 33/175 (19%)
Bromo_AAA 972..1082 CDD:99957
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0554
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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