DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13930 and dync2i2

DIOPT Version :9

Sequence 1:NP_647645.1 Gene:CG13930 / 38210 FlyBaseID:FBgn0035256 Length:685 Species:Drosophila melanogaster
Sequence 2:NP_001099160.1 Gene:dync2i2 / 794361 ZFINID:ZDB-GENE-070928-9 Length:501 Species:Danio rerio


Alignment Length:537 Identity:127/537 - (23%)
Similarity:199/537 - (37%) Gaps:101/537 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 DELLS--GTDKTRRTVDADTQTMTALMKSRLVNTERLTTAQMGSYVSNFEMYDTYTDLEKSTTSV 204
            ||.|.  |.:.|.|.....||...:.....:..||..|.|:               |:.::.|..
Zfish     4 DETLDLVGAESTWRKSHQQTQESRSCQTRPVHTTETETQAK---------------DVSENGTQT 53

  Fly   205 QVQGAKKMEITTYHVGGVDQFVGINCLPGFRLALMLTMRILASN----VFEPQQRRYRNMAPPDP 265
            |.|..:.:.:..    .:..|.|:  |...|.|..:.:|.|..|    .|:..:..:...     
Zfish    54 QDQSGQTLSLDR----DLTDFPGL--LDFMRRAEDVVIRELVKNSKSHAFDGFEVNWEEQ----- 107

  Fly   266 LAEDVKFKYRLGLLWRLSPPSSDPKVHQAVSDMSFCPSNGDIMAVAYGVYSHGKVSKLPRSGWVY 330
             .|.|...|      ||....:..|..|..|....|  .|.::|..:|....|..|.  ....|.
Zfish   108 -NESVSCMY------RLQHVDAQEKSLQVTSVSWNC--TGSVIACGFGRVDDGDWSN--EKACVC 161

  Fly   331 VWNIK----NPVNPERRYHYQVPVVTVEFSPTQPQLLAIGLHNGGVEVRDIS-GQDLPPLAVSQR 390
            .||:.    ||..|:.......||:.:.|.|.:|.::|.||::|.|.|.|.| .||| .||.:..
Zfish   162 TWNVDRQNLNPKRPDVIIDVATPVMCLCFHPVRPSVVAGGLYSGEVVVWDTSRSQDL-ILAQTGM 225

  Fly   391 LSSPYFEPVTAIKWIYFEGDVGCRNPHITPFLATSQAGAVTKYRLINSPNMLGLEQQRLQRAEGE 455
            .:..:.|||..|.|:     .|.|....: .|:....|.|..:.:..|...|.|.          
Zfish   226 SADTHREPVYQINWV-----PGARRGEFS-VLSAGSGGRVLLWTIDGSEAKLLLS---------- 274

  Fly   456 LEGIPIERQPPAASLLANRHPQCLEI-----VLDPVQSDIYYVLTDEGTLYKCS----------- 504
             .|..:.||....|..|::....|.|     .|.|...|.:.|.::.|.:.|||           
Zfish   275 -SGYALVRQQMPQSGAASKTRGSLTIGVTAVALSPWDLDTFLVGSEGGLVLKCSFSSETAAAVPS 338

  Fly   505 ------TNYPLQHLELRQVHDGPAACMEFSPWSPRMYLTCGSDWCIRIWLAGILLPIVTLQHHLS 563
                  ...|:|.  ......||...:.|||:...::::.|:|....:.......|::.|:...|
Zfish   339 DGESVILRAPMQF--SFSPRGGPIHSVHFSPFHRNLFVSVGTDGLAHLHSVLQPCPLLALRVSDS 401

  Fly   564 PVHCARWSRTHSTILVSLS-RSTVDIWDLRNSTMKPVSSTVIDAD-----IFYTTFKFTHCGRSL 622
            .|...|||.|...:..::: :..|.::||...:::||::  ||.:     .:...|...|. ..|
Zfish   402 YVFGVRWSPTRPLVFAAVTGQGLVQMFDLGRRSLRPVAT--IDQNAGGQPAYCLEFNPKHT-NLL 463

  Fly   623 AVGNEAG--NLLMLSFE 637
            ||||..|  |:..||.|
Zfish   464 AVGNADGSVNIWQLSAE 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13930NP_647645.1 WD40 <279..648 CDD:225201 99/394 (25%)
WD40 repeat 295..344 CDD:293791 13/52 (25%)
WD40 repeat 350..397 CDD:293791 17/47 (36%)
WD40 repeat 400..473 CDD:293791 14/72 (19%)
WD40 repeat 478..513 CDD:293791 12/56 (21%)
WD40 <518..>593 CDD:295369 18/75 (24%)
WD40 repeat 524..560 CDD:293791 7/35 (20%)
dync2i2NP_001099160.1 WD40 66..481 CDD:225201 111/456 (24%)
WD40 repeat 130..180 CDD:293791 13/53 (25%)
WD40 repeat 187..229 CDD:293791 16/42 (38%)
WD40 repeat 235..296 CDD:293791 15/77 (19%)
WD40 repeat 301..338 CDD:293791 8/36 (22%)
WD40 repeat 361..399 CDD:293791 7/37 (19%)
WD40 repeat 403..442 CDD:293791 10/40 (25%)
WD40 repeat 450..477 CDD:293791 9/27 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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