DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13930 and Sdic4

DIOPT Version :10

Sequence 1:NP_647645.1 Gene:CG13930 / 38210 FlyBaseID:FBgn0035256 Length:685 Species:Drosophila melanogaster
Sequence 2:NP_001368966.1 Gene:Sdic4 / 2768886 FlyBaseID:FBgn0053499 Length:554 Species:Drosophila melanogaster


Alignment Length:384 Identity:84/384 - (21%)
Similarity:153/384 - (39%) Gaps:75/384 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   313 GVYSHGKVSKLPRSGWVYVWNIK-NPVNPERRYHYQVPVVTVEFSPTQPQLLAIGLHNGGVEVRD 376
            |.|.:.:.|.....|.|.|||.| ....||..:|.|..|::..|:...|.|:..|.::|.:.:.|
  Fly   211 GSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWD 275

  Fly   377 ISGQDLPPLAVSQRLSSPYFEPVTAIKWIYFEGDVGCRNPHITPFLATSQAGAVTKYRLINSPNM 441
            ...|...|:..:...::.:..||..::.      ||.:|.|  ..::.|..|.:..:.|    :|
  Fly   276 NRVQKRTPIQRTPLSAAAHTHPVYCLQM------VGTQNAH--NVISISSDGKLCSWSL----DM 328

  Fly   442 LGLEQQRLQRAEGELEGIPIERQPPAASLLANRHP--QCLEIVLDPVQSDIYYVLTDEGTLYKCS 504
            |...|..|     ||:    :||..|.::.:...|  :...:|:.          :::|.:|..|
  Fly   329 LSQPQDTL-----ELQ----QRQSKAIAITSMAFPANEINSLVMG----------SEDGYVYSAS 374

  Fly   505 TNYPLQH------LELRQVHDGPAACM-----EFSPWSPRMYLTCGSDWCIRIWLAGILLPIVTL 558
                 :|      .|:.:.|.||...:     :.||....::||..    |:||  .:.|||.:.
  Fly   375 -----RHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSS----IKIW--SLKLPISSC 428

  Fly   559 QHHL-------SPVHC----------ARWSRTHSTILVSLSRS-TVDIWDLRNSTMKPVSSTVID 605
            |..:       .|::.          ..||..|..:..::..| .:|:|:|...|..|.:|.|:.
  Fly   429 QFSVVSGINSNKPLYSFEDNSDYMMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVA 493

  Fly   606 ADIFYTTFKFTHCGRSLAVGNEAGNLLMLSF-EDMPFPPHFQYKQLKRAIFKALSMQPD 663
            .........:|..|..:.:|:|||.|.:... |::..|...::.:....:.:....|.|
  Fly   494 GAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSD 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13930NP_647645.1 WD40 repeat 295..344 CDD:293791 11/31 (35%)
WD40 repeat 350..397 CDD:293791 9/46 (20%)
WD40 repeat 400..473 CDD:293791 16/72 (22%)
WD40 442..>629 CDD:441893 45/217 (21%)
WD40 repeat 478..513 CDD:293791 5/40 (13%)
WD40 <518..>593 CDD:475233 22/97 (23%)
WD40 repeat 524..560 CDD:293791 10/40 (25%)
Sdic4NP_001368966.1 Dynein_IC2 21..51 CDD:463291
WD40 196..523 CDD:475233 80/353 (23%)
WD40 repeat 196..245 CDD:293791 11/33 (33%)
WD40 repeat 251..289 CDD:293791 8/37 (22%)
WD40 repeat 298..337 CDD:293791 12/55 (22%)
WD40 repeat 349..446 CDD:293791 22/117 (19%)
WD40 repeat 452..490 CDD:293791 9/37 (24%)
WD40 repeat 498..524 CDD:293791 7/25 (28%)
Blue background indicates that the domain is not in the aligned region.

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