DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13930 and Sdic2

DIOPT Version :10

Sequence 1:NP_647645.1 Gene:CG13930 / 38210 FlyBaseID:FBgn0035256 Length:685 Species:Drosophila melanogaster
Sequence 2:NP_996516.1 Gene:Sdic2 / 2768883 FlyBaseID:FBgn0053497 Length:543 Species:Drosophila melanogaster


Alignment Length:367 Identity:83/367 - (22%)
Similarity:152/367 - (41%) Gaps:52/367 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   313 GVYSHGKVSKLPRSGWVYVWNIK-NPVNPERRYHYQVPVVTVEFSPTQPQLLAIGLHNGGVEVRD 376
            |.|.:.:.|.....|.|.|||.| ....||..:|.|..|::..|:...|.|:..|.::|.:.:.|
  Fly   211 GSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWD 275

  Fly   377 ISGQDLPPLAVSQRLSSPYFEPVTAIKWIYFEGDVGCRNPHITPFLATSQAGAVTKYRLINSPNM 441
            ...|...|:..:...::.:..||..::.      ||.:|.|  ..::.|..|.:..:.|    :|
  Fly   276 NRVQKRTPIQRTPLSAAAHTHPVYCLQM------VGTQNAH--NVISISSDGKLCSWSL----DM 328

  Fly   442 LGLEQQRLQRAEGELEGIPIERQPPAASLLANRHPQCLEIVLDPVQSDIYYVL--TDEGTLYKCS 504
            |...|..|     ||:    :||..|.::.:...|          .::|..|:  :::|.:|..|
  Fly   329 LSQPQDTL-----ELQ----QRQSKAIAITSMAFP----------ANEINSVVMGSEDGYVYSAS 374

  Fly   505 TNYPLQH------LELRQVHDGPAACM-----EFSPWSPRMYLTCGSDWCIRIWLAGILLPIVTL 558
                 :|      .|:.:.|.||...:     :.||....::||...||.|::|......|:.:.
  Fly   375 -----RHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSF 434

  Fly   559 QHHLSPVHCARWSRTHSTILVSLSRS-TVDIWDLRNSTMKPVSSTVIDADIFYTTFKFTHCGRSL 622
            :.:...|....||..|..:..::..| .:|:|:|...|..|.:|.|:..........:|..|..:
  Fly   435 EDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHV 499

  Fly   623 AVGNEAGNLLMLSF-EDMPFPPHFQYKQLKRAIFKALSMQPD 663
            .:|:|||.|.:... |::..|...::.:....:.:....|.|
  Fly   500 CIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSD 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13930NP_647645.1 WD40 repeat 295..344 CDD:293791 11/31 (35%)
WD40 repeat 350..397 CDD:293791 9/46 (20%)
WD40 repeat 400..473 CDD:293791 16/72 (22%)
WD40 442..>629 CDD:441893 44/200 (22%)
WD40 repeat 478..513 CDD:293791 6/42 (14%)
WD40 <518..>593 CDD:475233 20/80 (25%)
WD40 repeat 524..560 CDD:293791 9/40 (23%)
Sdic2NP_996516.1 Dynein_IC2 21..51 CDD:463291
WD40 196..512 CDD:475233 79/336 (24%)
WD40 repeat 196..245 CDD:293791 11/33 (33%)
WD40 repeat 251..289 CDD:293791 8/37 (22%)
WD40 repeat 298..337 CDD:293791 12/55 (22%)
WD40 repeat 349..435 CDD:293791 20/100 (20%)
WD40 repeat 441..479 CDD:293791 10/37 (27%)
WD40 repeat 487..513 CDD:293791 7/25 (28%)
Blue background indicates that the domain is not in the aligned region.

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