DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13930 and prp-17

DIOPT Version :9

Sequence 1:NP_647645.1 Gene:CG13930 / 38210 FlyBaseID:FBgn0035256 Length:685 Species:Drosophila melanogaster
Sequence 2:NP_492851.1 Gene:prp-17 / 172999 WormBaseID:WBGene00018625 Length:567 Species:Caenorhabditis elegans


Alignment Length:81 Identity:18/81 - (22%)
Similarity:34/81 - (41%) Gaps:1/81 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   518 HDGPAACMEFSPWSPRMYLTCGSDWCIRIWLAGILLPIV-TLQHHLSPVHCARWSRTHSTILVSL 581
            |:.....:::.|.|..::|:|..|..|::|.......:| |...|..||....::...:..|.:.
 Worm   274 HNKGVNFLQWFPKSAHLFLSCSMDTKIKLWEVYDRQRVVRTYAGHKLPVREVAFNNEGTEFLSAS 338

  Fly   582 SRSTVDIWDLRNSTMK 597
            ....|.:||.....:|
 Worm   339 FDRYVKLWDTETGQVK 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13930NP_647645.1 WD40 <279..648 CDD:225201 18/81 (22%)
WD40 repeat 295..344 CDD:293791
WD40 repeat 350..397 CDD:293791
WD40 repeat 400..473 CDD:293791
WD40 repeat 478..513 CDD:293791
WD40 <518..>593 CDD:295369 17/75 (23%)
WD40 repeat 524..560 CDD:293791 9/36 (25%)
prp-17NP_492851.1 WD40 267..567 CDD:238121 18/81 (22%)
WD40 repeat 279..317 CDD:293791 9/37 (24%)
WD40 repeat 322..359 CDD:293791 6/33 (18%)
WD40 repeat 364..402 CDD:293791
WD40 repeat 408..443 CDD:293791
WD40 repeat 451..491 CDD:293791
WD40 repeat 500..523 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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