DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX5 and rab6bb

DIOPT Version :10

Sequence 1:NP_647644.2 Gene:RabX5 / 38209 FlyBaseID:FBgn0035255 Length:277 Species:Drosophila melanogaster
Sequence 2:NP_001013485.1 Gene:rab6bb / 541339 ZFINID:ZDB-GENE-050320-28 Length:208 Species:Danio rerio


Alignment Length:244 Identity:78/244 - (31%)
Similarity:122/244 - (50%) Gaps:42/244 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LSKERDFGAQVRYYLEAPRKPKFRPCKVIFVGDCSVGKTAIVNRFCYDKFQSNYKATIGVDFELE 104
            :|...|||..:|         ||   |::|:|:.|||||:::.||.||.|.:.|:||||:||..:
Zfish     1 MSMGSDFGNPLR---------KF---KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK 53

  Fly   105 NFSILGHNYSLEMWDTAGQERFRCIAGAYYRNASVIVVTYDMSKKDSLESAKKWLNSALNYNASK 169
            ...:......|::||||||||||.:..:|.|:::|.||.||::..:|.:...||::.......|.
Zfish    54 TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNINSFQLTSKWIDDVRTERGSD 118

  Fly   170 RPLVFLVGTKADLLSKEEFVRMERLAGLAAAELQAEYWSVSARSGFKVTELFQRIAALAFEEAVM 234
             .::.|||.|.||..|.:....|  ....|.||...:...||::|..|.:||:|:||..      
Zfish   119 -VIIMLVGNKTDLEEKRQITIEE--GEQRAKELNVMFIETSAKTGSNVKQLFRRVAAAL------ 174

  Fly   235 QEIRSIKNKPQEQATQASVKSQTFDLRNFFGSRLSQQ------KSGCTC 277
                     |..::...:.|....|:      :|.:|      :|||:|
Zfish   175 ---------PGMESLDDNNKEGMIDI------KLDKQPDPPATESGCSC 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX5NP_647644.2 P-loop containing Nucleoside Triphosphate Hydrolases 66..230 CDD:476819 62/163 (38%)
rab6bbNP_001013485.1 Rab6 14..174 CDD:206654 63/165 (38%)

Return to query results.
Submit another query.