DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX5 and Rab7

DIOPT Version :9

Sequence 1:NP_647644.2 Gene:RabX5 / 38209 FlyBaseID:FBgn0035255 Length:277 Species:Drosophila melanogaster
Sequence 2:NP_001247276.1 Gene:Rab7 / 42841 FlyBaseID:FBgn0015795 Length:207 Species:Drosophila melanogaster


Alignment Length:192 Identity:68/192 - (35%)
Similarity:102/192 - (53%) Gaps:12/192 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 KVIFVGDCSVGKTAIVNRFCYDKFQSNYKATIGVDFELENFSILGHNYSLEMWDTAGQERFRCIA 130
            |||.:||.|||||:::|::...:|.:.||||||.||..:...:.....::::|||||||||:.:.
  Fly    10 KVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVVVNDRVVTMQIWDTAGQERFQSLG 74

  Fly   131 GAYYRNASVIVVTYDMSKKDSLESAKKWLNSALNYNASKR-----PLVFLVGTKADLLSKEEFVR 190
            .|:||.|...|:.||::..:|.::...|.:..| ..||.|     |.|.| |.|.||.:::  |.
  Fly    75 VAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFL-IQASPRDPDHFPFVVL-GNKVDLDNRQ--VS 135

  Fly   191 MERLAGLAAAELQAEYWSVSARSGFKVTELFQRIAALAFEEAVMQEIRSIKNKPQEQATQAS 252
            ..|......::....|:..||:.|..|...||.||..|.|.....|:  |.:.| :|.|..|
  Fly   136 TRRAQQWCQSKNDIPYYETSAKEGINVEMAFQVIAKNALELEAEAEV--INDFP-DQITLGS 194

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX5NP_647644.2 P-loop_NTPase 66..230 CDD:304359 61/168 (36%)
RAB 66..225 CDD:197555 58/163 (36%)
Rab7NP_001247276.1 Rab7 9..179 CDD:206655 62/172 (36%)
RAB 9..174 CDD:197555 60/167 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454533
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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