DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX5 and rab41

DIOPT Version :10

Sequence 1:NP_647644.2 Gene:RabX5 / 38209 FlyBaseID:FBgn0035255 Length:277 Species:Drosophila melanogaster
Sequence 2:NP_998530.1 Gene:rab41 / 406674 ZFINID:ZDB-GENE-040426-2686 Length:211 Species:Danio rerio


Alignment Length:233 Identity:77/233 - (33%)
Similarity:120/233 - (51%) Gaps:30/233 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 DFGAQVRYYLEAPRKPKFRPCKVIFVGDCSVGKTAIVNRFCYDKFQSNYKATIGVDFELENFSIL 109
            :||..:|         ||   |::|:|:.|||||:::.||.||.|.:.|:||||:||..:...:.
Zfish     9 EFGDPLR---------KF---KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 61

  Fly   110 GHNYSLEMWDTAGQERFRCIAGAYYRNASVIVVTYDMSKKDSLESAKKWLNSALNYNASKRPLVF 174
            .....|::||||||||||.:..:|.|::::.||.||::..:|.:...||::.......|. .::.
Zfish    62 DRTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSD-VIIM 125

  Fly   175 LVGTKADLLSKEEFVRMERLAGLAAAELQAEYWSVSARSGFKVTELFQRIAALAFEEAVMQEIRS 239
            |||.|.||..|.: |.:| .|...|.||...|...||::|:.|.:||:|:||..           
Zfish   126 LVGNKTDLGDKRQ-VSVE-AAEKKARELGVMYIETSAKAGYNVKQLFRRVAAAL----------- 177

  Fly   240 IKNKPQEQATQASVKSQTFDLRNFFGSRLSQQKSGCTC 277
                |...:|....|....|::......|...:|.|:|
Zfish   178 ----PGMDSTPEKSKEDMIDIKLEKPPELPVTESSCSC 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX5NP_647644.2 P-loop containing Nucleoside Triphosphate Hydrolases 66..230 CDD:476819 64/163 (39%)
rab41NP_998530.1 Rab6 17..177 CDD:206654 65/165 (39%)

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