DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpL23A and rpl23a

DIOPT Version :10

Sequence 1:NP_523886.1 Gene:RpL23A / 38208 FlyBaseID:FBgn0026372 Length:277 Species:Drosophila melanogaster
Sequence 2:NP_001001593.1 Gene:rpl23a / 335539 ZFINID:ZDB-GENE-030131-7479 Length:155 Species:Danio rerio


Alignment Length:164 Identity:101/164 - (61%)
Similarity:122/164 - (74%) Gaps:10/164 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 AAKAKKGVKPVTKPAKGTAKAKAVALLNAKKVQKKIIKGAFGTRARKIRTNVHFRRPTTLKLPRS 178
            |.||||    ...|||..||:||:      |.:|.::||....:.:||||...|.||.||:|.|.
Zfish     2 APKAKK----EAVPAKTEAKSKAL------KAKKAVLKGVHSQKKKKIRTTPTFHRPKTLRLRRQ 56

  Fly   179 PKYPRKSVPTRNRMDAYNIIKYPLTTEAAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVA 243
            |||||||.|.||::|.|.|||:|||||:|||||||||||||:..::|||:.::.||:|.|||.||
Zfish    57 PKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKHAVKKPYDIDVA 121

  Fly   244 KVNVLIRPDGQKKAYVRLARDYDALDIANKIGII 277
            |||.||||||:||||||||.||||||:|||||||
Zfish   122 KVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL23ANP_523886.1 PTZ00191 132..277 CDD:185507 91/144 (63%)
rpl23aNP_001001593.1 PTZ00191 35..155 CDD:185507 83/119 (70%)

Return to query results.
Submit another query.