Sequence 1: | NP_001097475.2 | Gene: | Srrm234 / 38206 | FlyBaseID: | FBgn0035253 | Length: | 1655 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001355616.1 | Gene: | Srrm2 / 75956 | MGIID: | 1923206 | Length: | 2703 | Species: | Mus musculus |
Alignment Length: | 2039 | Identity: | 461/2039 - (22%) |
---|---|---|---|
Similarity: | 703/2039 - (34%) | Gaps: | 736/2039 - (36%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MYNGIGLTTPRGSGTNGHVQRNWACVRPGKKDK-DYRAEDDTKKLDAQLNRPPNKEILDHDRKRK 64
Fly 65 IEVKCLELEDILEKQGRTPEEIKSQVDSFRQKLMGQGKTDLAKDEFGRVANTTTSTATAAVRTTA 129
Fly 130 TASAATASTMTTTTEATTVKVAKPKKRRKRRKRAGHAITTTTTEKSAAISTPGSKTSSPRTQTGE 194
Fly 195 PASSAPSATSNGARKTKAPYFQHDNREYLAKYESFRLTAHTWNYAAVARKFKPLRPALASGANKT 259
Fly 260 RRPAVSKRTHPDCACACQQKDPEPALEPAHRTAEHSIQKELPSSQMKINIDGSVLLELLKYSSSS 324
Fly 325 LLGTLLGAGSAVATSARDTHQIAEAQQQKNARLREAFNISEYFVEGSSFDGDRKAKEDLAKSVAL 389
Fly 390 QKELDAQRESLAAAAAAAAAGKDKETGKRYALVRTPSRERDRDAGDAAANGDERDHVSKTDKKKR 454
Fly 455 KKR-----ARESSASP--ERKKKKKSKKHKKESKSKKKRSR-------------KRKHSES---- 495
Fly 496 ------GRDSDRDSDEEDDSSEEERRE---------------------------------SKNVR 521
Fly 522 KKA-------KKDKKKRDKKLKKKSRARASSS----------------------DSER------- 550
Fly 551 TNSPSRKENKSDRSRGAKASKSDEKAPQQENVMRSRSRER-----KDTRSSRPLEASIDSRQRKP 610
Fly 611 ---RERSAATPPRKEPERHRERSKDRQRS-KEKHRS-RDRLRSRERQRSRER---QRSRERQRSK 667
Fly 668 ERQRSKERQRSIERQRSKERQRSKERQR---SRSKDALRCKEKPQCNEKERSRERRRSKSKDRQ- 728
Fly 729 ----RSKEK---HRPKDEQQSVDKRRDRSTDRSKENQRSNE-----RQRSKERQRSKERERSKDR 781
Fly 782 QRSRERRRSKEGQLSKDRQGLKERQRSNERK-----RSKERQPSKEKQRSRE-------RQRSRE 834
Fly 835 PLQSKDRQRSKERQ-RSRERPAKEARPTRSPRERSSKSRDDRRHRSPTNASRKQKDDTKLSRNAR 898
Fly 899 -FKSP----------------------------AHSPEAPPKKSVPTP-----AFNPFKAAEDTV 929
Fly 930 NDILGTKSVMVALEQTKRQRAASSSSSDSDSSGSSSTSSRTP--------SPK----PTPRKQKK 982
Fly 983 RSKTPELKEVKKEISPRKESRVSVKREQSNSPQKSKSKSKVDESSPKRTSR-------------- 1033
Fly 1034 -RSRSISSE--------LRYS-------------PAERH--------PERYHDIVQDKK------ 1062
Fly 1063 ---RPSKVREAHSTKPAPVVRLRAQSDDGSDA------ETGVDGAALEEFQQSRRE--------- 1109
Fly 1110 ----------REEQQELRMLEQLKSGIA-----------------------------AKAKQKIK 1135
Fly 1136 IMEKD------------PAKEGSEVSGSDQVTATKRNSLSEFLVA------NNVTALINTLTTTT 1182
Fly 1183 VTLTTTPPPPLAVVVP--LEQRQEQPQ---QRDPDRELSVPVEDTVKKRDTSTPPICKTPQVTA- 1241
Fly 1242 -NGDAKSPTLVHKNHVHHNRPPPQHMHHHSQQQQHHQHPPGKRIFHNRTLNN--NPNSRHSTNNP 1303
Fly 1304 HACGGGGVPHSNSNSSNSGGNNNNAAMLPFLAGTPGTYNRTTNRLNHGPLLTATHYNICKNHQHS 1368
Fly 1369 LQQQQAHHLARGLVYNSALFGHGQRHPGLLSLTGAGVGM-SGPGAPLLGHPSHVRGGGGPISFNA 1432
Fly 1433 AAAAAAVAANSISYLHHHHQHQQKPKIVIKPFKIHDPQPLVAALADSSLVDAIVSKVSTATV--- 1494
Fly 1495 -AAAESAARRSRS--------------RERR-------SRSKRRTSTSHHRHDSSS---ESRSRY 1534
Fly 1535 SSSSSRSGS-----------HSSRSGSHSS-------RTSCSTNSSSGSSSSGSG---SGSSQSG 1578
Fly 1579 SRSPSIPR----RRGSPSFLD---------RRRITSARKRPIPYHHKANAEGEVEDASSCCSSCF 1630
Fly 1631 SRASSPATPLLTPLRNSRSPSMAA 1654 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Srrm234 | NP_001097475.2 | cwf21 | 58..98 | CDD:285507 | 18/39 (46%) |
MIP-T3 | 672..>936 | CDD:287245 | 89/326 (27%) | ||
SRRM_C | <1584..1610 | CDD:291883 | 12/38 (32%) | ||
Srrm2 | NP_001355616.1 | cwf21 | 59..101 | CDD:369806 | 19/41 (46%) |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 141..1007 | 245/938 (26%) | |||
Sufficient for RNA-binding. /evidence=ECO:0000250 | 197..259 | 23/61 (38%) | |||
PHA03307 | 309..>686 | CDD:223039 | 101/391 (26%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1024..1112 | 11/87 (13%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1136..2092 | 128/608 (21%) | |||
PHA03247 | <1982..2466 | CDD:223021 | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 2263..2703 | ||||
PHA03307 | 2280..>2690 | CDD:223039 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 261 | 1.000 | Domainoid score | I1954 |
eggNOG | 1 | 0.900 | - | - | E1_KOG1869 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 268 | 1.000 | Inparanoid score | I3015 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0003470 | |
OrthoInspector | 1 | 1.000 | - | - | oto95083 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_102153 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R267 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
8 | 7.840 |