DRSC/TRiP Functional Genomics Resources

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Protein Alignment Srrm234 and Srrm2

DIOPT Version :9

Sequence 1:NP_001097475.2 Gene:Srrm234 / 38206 FlyBaseID:FBgn0035253 Length:1655 Species:Drosophila melanogaster
Sequence 2:NP_001355616.1 Gene:Srrm2 / 75956 MGIID:1923206 Length:2703 Species:Mus musculus


Alignment Length:2039 Identity:461/2039 - (22%)
Similarity:703/2039 - (34%) Gaps:736/2039 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MYNGIGLTTPRGSGTNGHVQRNWACVRPGKKDK-DYRAEDDTKKLDAQLNRPPNKEILDHDRKRK 64
            |||||||.|||||||||:||||.:.||..:.:: ||:.|::.:.|:|.|.:.||.:||||:|||:
Mouse     1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRHLEAALVKRPNPDILDHERKRR 65

  Fly    65 IEVKCLELEDILEKQGRTPEEIKSQVDSFRQKLMGQGKTDLAKDEFGRVANTTTSTATAAVRTTA 129
            :|::|||||:::|:||...::|:.:|.:||..|:.:.....||:|                    
Mouse    66 VELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDVNPGAKEE-------------------- 110

  Fly   130 TASAATASTMTTTTEATTVKVAKPKKRRKRRKRAGHAITTTTTEKSAAISTPGSKTSSPRTQTGE 194
                                                              |||            
Mouse   111 --------------------------------------------------TPG------------ 113

  Fly   195 PASSAPSATSNGARKTKAPYFQHDNREYLAKYESFRLTAHTWNYAAVARKFKPLRPALASGANKT 259
                                                                             
Mouse   114 ----------------------------------------------------------------- 113

  Fly   260 RRPAVSKRTHPDCACACQQKDPEPALEPAHRTAEHSIQKELPSSQMKINIDGSVLLELLKYSSSS 324
            :||.|:                                                           
Mouse   114 QRPVVT----------------------------------------------------------- 119

  Fly   325 LLGTLLGAGSAVATSARDTHQIAEAQQQKNARLREAFNISEYFVEGSSFDGDRKAKEDLAKSVAL 389
                             :|||:||..::||.|||.||.||:.:|:|||||..|:|:|  ||.:| 
Mouse   120 -----------------ETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRRARE--AKQIA- 164

  Fly   390 QKELDAQRESLAAAAAAAAAGKDKETGKRYALVRTPSRERDRDAGDAAANGDERDHVSKTDKKKR 454
                                   .|..|.|:|||..|..|                 |.|.|:|:
Mouse   165 -----------------------PEPPKPYSLVRETSSSR-----------------SPTPKQKK 189

  Fly   455 KKR-----ARESSASP--ERKKKKKSKKHKKESKSKKKRSR-------------KRKHSES---- 495
            ||:     .|..|:||  ||||..|.|||:.||:|||::.|             |||.|.|    
Mouse   190 KKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPA 254

  Fly   496 ------GRDSDRDSDEEDDSSEEERRE---------------------------------SKNVR 521
                  .|.:..||....|:|....|.                                 :.|::
Mouse   255 PKSRRAHRSTSADSASSSDTSRSRSRSAAAKIHTTALTGQSPPLASGHQGEGDAPSVEPGATNIQ 319

  Fly   522 KKA-------KKDKKKRDKKLKKKSRARASSS----------------------DSER------- 550
            :.:       :......||..|:||..|.|.|                      ||.|       
Mouse   320 QPSSPAPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHVDSPRPLAAIPS 384

  Fly   551 TNSPSRKENKSDRSRGAKASKSDEKAPQQENVMRSRSRER-----KDTRSSRPLEASIDSRQRKP 610
            :..|....:::..:||....||.||.||      |.|.|.     :.|:.||...:|.:|.:..|
Mouse   385 SQEPVNPSSEASPTRGCSPPKSPEKPPQ------STSSESCPPSPQPTKGSRHASSSPESLKPTP 443

  Fly   611 ---RERSAATPPRKEPERHRERSKDRQRS-KEKHRS-RDRLRSRERQRSRER---QRSRERQRSK 667
               ..|..::.|..:...|....:|:..| ...||: |.|..:.:|.|||.|   :|...|.||.
Mouse   444 APGSRREISSSPTSKNRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSP 508

  Fly   668 ERQRSKERQRSIERQRSKERQRSKERQR---SRSKDALRCKEKPQCNEKERSRERRRSKSKDRQ- 728
            :.:||:..||..:.:..:.|.||:..||   |||::..|         :.|||..||.:|..|. 
Mouse   509 QWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQR---------RGRSRSARRGRSHSRSP 564

  Fly   729 ----RSKEK---HRPKDEQQSVDKRRDRSTDRSKENQRSNE-----RQRSKERQRSKERERSKDR 781
                ||:.:   .|.:...::..:||.||...::...||..     |.||:...|.:.|.||..|
Mouse   565 ATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRSPVR 629

  Fly   782 QRSRERRRSKEGQLSKDRQGLKERQRSNERK-----RSKERQPSKEKQRSRE-------RQRSRE 834
            :|||.|.:::....|:.|...:...||..|.     ||:.|.|::...|||.       |.|||.
Mouse   630 RRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPARRGRSRSRT 694

  Fly   835 PLQSKDRQRSKERQ-RSRERPAKEARPTRSPRERSSKSRDDRRHRSPTNASRKQKDDTKLSRNAR 898
            |.:.:.|.||..|: ||..|..:....:.|..||.:|||..:| ||.:|:|.:.|.....||.:|
Mouse   695 PARRRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQR-RSRSNSSPEMKKSHVSSRRSR 758

  Fly   899 -FKSP----------------------------AHSPEAPPKKSVPTP-----AFNPFKAAEDTV 929
             ..||                            :.|..:|||:...||     :.:|....:...
Mouse   759 SLSSPRSKAKSLRRSLSGSSPCPKQKSQTPTRRSRSGSSPPKQKSKTPPRQSRSNSPQPKVKSGT 823

  Fly   930 NDILGTKSVMVALEQTKRQRAASSSSSDSDSSGSSSTSSRTP--------SPK----PTPRKQKK 982
            ....|:.:.|.|.|.|    |.....|.|:||......||||        ||:    ..||:...
Mouse   824 PPRPGSVTNMQADECT----ATPQRQSHSESSPDGEVKSRTPSRQSCSGSSPRVKSSTPPRQSPS 884

  Fly   983 RSKTPELKEVKKEISPRKESRVSVKREQSNSPQKSKSKSKVDESSPKRTSR-------------- 1033
            ||.:|:.| ||..||||..|..|     |:||    |.|:|...:|:|.||              
Mouse   885 RSSSPQPK-VKTVISPRGRSHSS-----SSSP----SPSRVTSRTPQRKSRSISPCPKVDSRLRH 939

  Fly  1034 -RSRSISSE--------LRYS-------------PAERH--------PERYHDIVQDKK------ 1062
             ||||.|.:        ||:|             |.:::        |::..|......      
Mouse   940 SRSRSSSPDSKMELGTPLRHSGSTSPYLKSMLQTPPDQNLSGSKSPCPQKSRDSPTGSSGSFHLC 1004

  Fly  1063 ---RPSKVREAHSTKPAPVVRLRAQSDDGSDA------ETGVDGAALEEFQQSRRE--------- 1109
               .||.:....|...|..|:.:..:....|.      :|.|:...|:...|:..:         
Mouse  1005 PGVTPSSIVPGESCFSASFVQQKGHTQTWPDTSSPEVMQTQVESPLLQSKSQTSPKGSLSRSSSP 1069

  Fly  1110 ----------REEQQELRMLEQLKSGIA-----------------------------AKAKQKIK 1135
                      ::::.|:....:||||::                             ::.|:::.
Mouse  1070 VTELTARSPVKQDKSEISTDPKLKSGMSPEQSKTKPDSSIYPLVDSKSFLVQSRLEPSELKERLG 1134

  Fly  1136 IMEKD------------PAKEGSEVSGSDQVTATKRNSLSEFLVA------NNVTALINTLTTTT 1182
            ::::|            |.::..|  .|..:..|.|..|.|...|      .:..:|:...:...
Mouse  1135 LIQEDVASSCIPRDKFSPTQDRPE--SSTVLKVTPRVLLKERSGAGSPPGKRDQKSLLPNSSQDE 1197

  Fly  1183 VTLTTTPPPPLAVVVP--LEQRQEQPQ---QRDPDRELSVPVEDTVKKRDTSTPPICKTPQVTA- 1241
            :........||:.|:|  ..:.:|.|.   :..|:.|....|...:.:..:......:||.|.: 
Mouse  1198 LMEVEKSEQPLSQVLPSLSPEHKEMPGSNIESSPEVEERPAVLSALDQSQSQPSKAAETPAVASC 1262

  Fly  1242 -NGDAKSPTLVHKNHVHHNRPPPQHMHHHSQQQQHHQHPPGKRIFHNRTLNN--NPNSRHSTNNP 1303
             :|...||.  ||...|   .||:.....|..:..:..|..:       :|.  :|..:...|..
Mouse  1263 WSGPQVSPE--HKELSH---SPPRENSFESSLEFKNSGPVSE-------VNTGFSPEVKEELNGS 1315

  Fly  1304 HACGGGGVPHSNSNSSNSGGNNNNAAMLPFLAGTPGTYNRTTNRLNHGPLLTATHYNICKNHQHS 1368
            ........|..:....:.....:::.:.|.:....|.:   :::....|:|...........:.|
Mouse  1316 FLNQTEADPSVDMKEQSRSSRRSSSELSPEVVEKVGLF---SSQKVSSPVLETVQQRTPSRERSS 1377

  Fly  1369 LQQQQAHHLARGLVYNSALFGHGQRHPGLLSLTGAGVGM-SGPGAPLLGHPSHVRGGGGPISFNA 1432
               ..:..|..||          .|.|...|.:|:..|: .|.|.|    ..|...|..|...:.
Mouse  1378 ---SASPELKDGL----------PRTPSRRSRSGSSPGLRDGSGTP----SRHSLSGSSPGMKDT 1425

  Fly  1433 AAAAAAVAANSISYLHHHHQHQQKPKIVIKPFKIHDPQPLVAALADSSLVDAIVSKVSTATV--- 1494
            ....:...:...|        ..:||.:.:..:.....|......:.|:........|.::|   
Mouse  1426 PQTPSRGRSECDS--------SPEPKALPQTPRARSHSPSSPERNNKSVTPQRERSGSESSVEQK 1482

  Fly  1495 -AAAESAARRSRS--------------RERR-------SRSKRRTSTSHHRHDSSS---ESRSRY 1534
             .|..|..:||||              :||.       |:.|.||......|..||   :|:||:
Mouse  1483 NLARTSPGQRSRSGSSQELDGKPSASPQERSESDSSPDSKPKTRTPLRQRSHSGSSPEVDSKSRH 1547

  Fly  1535 SSSSSRSGS-----------HSSRSGSHSS-------RTSCSTNSSSGSSSSGSG---SGSSQSG 1578
            |...|||||           ..::||:.||       ..:...:|.|||||...|   .|||.|.
Mouse  1548 SPRLSRSGSSPEMKDKPRVLQRAQSGTDSSPEHKIPAPRALPRHSRSGSSSKERGPSPEGSSSSE 1612

  Fly  1579 SRSPSIPR----RRGSPSFLD---------RRRITSARKRPIPYHHKANAEGEVEDASSCCSSCF 1630
            |.....|:    ||||.|.::         |||  |:|..| ....||........||       
Mouse  1613 SSPEHAPKSRTARRGSRSSIEPKTKSHTPPRRR--SSRSSP-ELTRKARVSRRSRSAS------- 1667

  Fly  1631 SRASSPATPLLTPLRNSRSPSMAA 1654
               |||.....||.|..||||:::
Mouse  1668 ---SSPEIRSRTPPRRRRSPSVSS 1688

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Srrm234NP_001097475.2 cwf21 58..98 CDD:285507 18/39 (46%)
MIP-T3 672..>936 CDD:287245 89/326 (27%)
SRRM_C <1584..1610 CDD:291883 12/38 (32%)
Srrm2NP_001355616.1 cwf21 59..101 CDD:369806 19/41 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 141..1007 245/938 (26%)
Sufficient for RNA-binding. /evidence=ECO:0000250 197..259 23/61 (38%)
PHA03307 309..>686 CDD:223039 101/391 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1024..1112 11/87 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1136..2092 128/608 (21%)
PHA03247 <1982..2466 CDD:223021
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2263..2703
PHA03307 2280..>2690 CDD:223039
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 261 1.000 Domainoid score I1954
eggNOG 1 0.900 - - E1_KOG1869
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 268 1.000 Inparanoid score I3015
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003470
OrthoInspector 1 1.000 - - oto95083
orthoMCL 1 0.900 - - OOG6_102153
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R267
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.840

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