DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Srrm234 and AT3G49601

DIOPT Version :9

Sequence 1:	NP_001097475.2	Gene:	Srrm234 / 38206	FlyBaseID:	FBgn0035253	Length:	1655	Species:	Drosophila melanogaster
Sequence 2:	NP_001118799.1	Gene:	AT3G49601 / 6241216	AraportID:	AT3G49601	Length:	591	Species:	Arabidopsis thaliana

Alignment Length:	869	Identity:	206/869 - (23%)
Similarity:	326/869 - (37%)	Gaps:	298/869 - (34%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MYNGIGLTTPRGSGTNGHVQRNWACVRP---GKKDKDYRA-EDDTKKLDAQLNRPPNKEILDHDR 61
            |||||||.|.|||||||:||.|...|||   ||..|..:. |||  :..|.|::.|||.||:|||
plant     1 MYNGIGLQTARGSGTNGYVQTNKFFVRPRNGGKPVKGGKGFEDD--EGTAGLSKKPNKAILEHDR 63

  Fly    62 KRKIEVKCLELEDILEKQGRTPEEIKSQVDSFRQKLMGQGKTDLAKDEFGRVANTTTSTATAAVR 126
            ||:|.:|...|||.|..||.:..||..:::..|..|
plant    64 KRQIHLKLAILEDKLADQGYSDIEIAQKLEEARVSL----------------------------- 99

  Fly   127 TTATASAATASTMTTTTEATTVKVAKPKKRRKRRKRAGHAITTTTTEKSAAISTPGSKTSSPRTQ 191
                                                          |.:||.:...|.:....||
plant   100 ----------------------------------------------EAAAAANEEESDSKVSNTQ 118

  Fly   192 TGEPASSAPSATSNGARKTKAPYFQHDNREYLAKYESFRLTAHTWNYAAVARKFKPLRPALASGA 256
            |.:.|          |||.|             :.|:||        ||:..
plant   119 THQVA----------ARKEK-------------QMEAFR--------AALGL------------- 139

  Fly   257 NKTRRPAVSKRTHPDCACACQQKDPEPALEPAHRTAEHSIQKELPSSQMKINIDGSVLLELLKYS 321
                         ||     ||           :.||..|..:.|   |:...:|
plant   140 -------------PD-----QQ-----------QVAEEGIIDDEP---MREGFEG---------- 162

  Fly   322 SSSLLGTLLGAGSAVATSARDTHQIAEAQQQKNARLREAFNISEYFVEGSSFDGDRKAKEDLAKS 386
                                              ||:|....|  |::..|  |.:|..||:.:.
plant   163 ----------------------------------RLKERREHS--FLDRDS--GRKKVDEDVDEK 189

  Fly   387 VALQKELDAQRESLAAAAAAAAAGKDKETGKRYALVRTPSRERDRDAGDAAANGDERDHVSKTDK 451
            .|..||...||                                   .||    .|:.|.|.:..|
plant   190 DAKVKESKKQR-----------------------------------GGD----DDDVDVVKRHKK 215

  Fly   452 KKRKKRARESSASPERKKKKKSKKHKKESKSKKKRSRKRKHSESGRDSDRDSDEEDDSSEEERRE 516
            |:.|||..:.|:..:...:.:.::.||::|.:|:.|   :...|..||:.|||.:|.
plant   216 KESKKRRHDDSSESDEHGRDRRRRSKKKAKGRKQES---ESDSSSSDSESDSDSDDG-------- 269

  Fly   517 SKNVRKKAKKDKKKRDKKLKKKSRARASSSDSERTNSPSRKENKSDRSRGAKASKSDEKAPQQEN 581
            .|..|||..|..|||.:      |.|:.||:||...|...|:.:....:...:::|..|..:.::
plant   270 KKRGRKKPTKTTKKRSR------RKRSVSSESEEVESDDSKKLRKSHKKSLPSNRSGSKELRDKH 328

  Fly   582 VMRSRS-RERKDTRSSRPLEASIDSRQRKPRERSAATPPRKEPERHR--ERSKDRQRSKEKHRSR 643
            ..:||: |:|.|:..|.|  .|.|::|          |.||:.|.:|  ::.|......|....:
plant   329 DEQSRAGRKRHDSDVSEP--ESEDNKQ----------PLRKKEEAYRGGQKQKRDDEDVEADHLK 381

  Fly   644 DRLRSRERQRSRERQRSRERQRSKERQRSKERQRS--IERQRSKERQ-----RSKERQRSRSKDA 701
            ||....:::.:|:...|....::|::.|||....|  :.::|.:|..     :.|.|..||.|:.
plant   382 DRYTRDDKKAARDSDDSEIEYQNKKQLRSKVEVYSAGMSQKRKEEEDVTKHGKDKYRSDSRGKEV 446

  Fly   702 LRCKEKPQCNEKERSRE-RRRSKSKDRQRSKEKHRPKDEQQSVDKRRDR-STDRSKENQRSNERQ 764
            .|     ..::.|...| |::.|::..||.: ||:.::::.:.:..||| ..|.:.:...:.:..
plant   447 AR-----DSDDSEAEYENRKKLKNESYQRGR-KHKREEDEDNDNHGRDRYRGDDAVKRYGTIKED 505

  Fly   765 RSKERQRSKERERSKDRQRSRERRRSKEGQLSKDRQGLKERQRSNERKRSKERQPSKEKQRSRER 829
            ..:.|.|:.|.|...||.|.|.||.|.:....:.:.| ::|.|.:.| |:..::...:.:.||||
plant   506 DDRYRGRAIEEEGDDDRGRYRPRRESVKDDEEEYKHG-RDRYRGDGR-RATGKEDDDDDRVSRER 568

  Fly   830 QRSREPLQSKDRQRSKERQRSRER 853
            :.|     |:.|.|..:.:.|.:|
plant   569 EYS-----SRGRSRYDDSRSSGKR 587

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Srrm234	NP_001097475.2	cwf21	58..98	CDD:285507	16/39 (41%)
		MIP-T3	672..>936	CDD:287245	49/191 (26%)
		SRRM_C	<1584..1610	CDD:291883
AT3G49601	NP_001118799.1	cwf21	60..99	CDD:285507	16/38 (42%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1869
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0003470
OrthoInspector	1	1.000	-	-		oto3921
orthoMCL	1	0.900	-	-		OOG6_102153
Panther	1	1.100	-	-	LDO	PTHR36562
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	7	6.900