Sequence 1: | NP_001097475.2 | Gene: | Srrm234 / 38206 | FlyBaseID: | FBgn0035253 | Length: | 1655 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001264083.1 | Gene: | Srrm2 / 302969 | RGDID: | 1310163 | Length: | 2707 | Species: | Rattus norvegicus |
Alignment Length: | 2060 | Identity: | 461/2060 - (22%) |
---|---|---|---|
Similarity: | 689/2060 - (33%) | Gaps: | 775/2060 - (37%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MYNGIGLTTPRGSGTNGHVQRNWACVRPGKKDK-DYRAEDDTKKLDAQLNRPPNKEILDHDRKRK 64
Fly 65 IEVKCLELEDILEKQGRTPEEIKSQVDSFRQKLMGQGKTDLAKDEFGRVANTTTSTATAAVRTTA 129
Fly 130 TASAATASTMTTTTEATTVKVAKPKKRRKRRKRAGHAITTTTTEKSAAISTPGSKTSSPRTQTGE 194
Fly 195 PASSAPSATSNGARKTKAPYFQHDNREYLAKYESFRLTAHTWNYAAVARKFKPLRPALASGANKT 259
Fly 260 RRPAVSKRTHPDCACACQQKDPEPALEPAHRTAEHSIQKELPSSQMKINIDGSVLLELLKYSSSS 324
Fly 325 LLGTLLGAGSAVATSARDTHQIAEAQQQKNARLREAFNISEYFVEGSSFDGDRKAKEDLAKSVAL 389
Fly 390 QKELDAQRESLAAAAAAAAAGKDKETGKRYALVRTPSRERDRDAGDAAANGDERDHVSKTDKKKR 454
Fly 455 KKR-----ARESSASP--ERKKKKKSKKHKKESKSKKKRSR-------------KRKHSES---- 495
Fly 496 ------GRDSDRDSDEEDDSSEEERRE--------------------------------SKNVRK 522
Fly 523 KAKKDKKKR-------DKKLKKKSRARASSS----------------------DSER-------T 551
Fly 552 NSPSRKENKSDRSRGAKASKSDEKAPQQENVMRSRSRERKDTRSSRPLEASIDSRQRKP---RER 613
Fly 614 SAATPPRKEPERHRERSKDRQRS-KEKHRS-RDRLRSRERQRSRER---QRSRERQRSKERQRSK 673
Fly 674 ERQRSIERQRSKERQRSKERQR---SRSKDALRCKEKPQCNEKERSRERRRSKSKDRQ-----RS 730
Fly 731 KEK---HRPKDEQQSVDKRRDRSTDRSKENQRSNE-----RQRSKERQRSKERERSKDRQRSRER 787
Fly 788 RRSKEGQLSKDRQGLKERQRSNERK-----RSKERQPSKEKQRSRE-------RQRSREPLQSKD 840
Fly 841 RQRSKERQ-RSRERPAKEARPTRSPRERSSKSRDDRRHRSPTNASRKQKDDTKLSRNAR-FKSP- 902
Fly 903 ---------------------------AHSPEAPPK-KSVPTPAFNPFKAAEDTVNDILGTKSVM 939
Fly 940 VALEQTKRQRAASSSSSDSDSSGSSSTSSRTP--------SPK----PTPRKQKKRSKTPELKEV 992
Fly 993 KKEISPRKESRVSVKREQSNSPQKSKSKSKVDESSPKRTSR----------------RSRSISSE 1041
Fly 1042 --------LRYS---------------PAERH--------PERYHD------------------- 1056
Fly 1057 -----------IVQDKKRPS--------KVREAHSTKP------------------APVVRLRAQ 1084
Fly 1085 S---DDGSDAETG-----------------------VDGAALEEFQQSRREREEQQE-LRMLEQL 1122
Fly 1123 KSGIAAKA-------------------KQKIKIMEKDPAKEGSEVSGSDQVTATKRNSLSEFLVA 1168
Fly 1169 NNVTALINTLTTTTVTLTTTPPPPLAVVVPLEQRQEQPQ-----QRDPDRELSVPVEDTVKKRDT 1228
Fly 1229 STPPICKTPQVTA--NGDAKSPTLVHKNHVHHNRPPPQHMHHHSQQQQHHQHPPGKRIFHNRTLN 1291
Fly 1292 N-----------NPNSRHSTNNPHACGGGGVPHSN-SNSSNSGGNNNNAAMLPFLAGTPGTYNRT 1344
Fly 1345 TNRLNHGPLLTATHYNICKNHQHSLQQQQAHHLARGLVYNSALFGHGQRHPGLLSLTGAGVGMSG 1409
Fly 1410 PGAPLLGHPSHVRGGGGPISFNAAAAAAAVAANSISYLHHHHQHQQKPKIVIKP----FKIHDP- 1469
Fly 1470 ------QPLVAALADSSLVDAIVSKVSTATVAAAESAARRSRS--------------RERR---- 1510
Fly 1511 ---SRSKRRTSTSHHRHDSSS---ESRSRYSSSSSRSGS-----------HSSRSGSHSS----- 1553
Fly 1554 -------RTSCSTNSSSGSSSSGSGSGSSQSGSRSPSIPR--RRGSPSFLDRRRITSARKRPIPY 1609
Fly 1610 HHKANAEGEVEDASSCCSSCFSRASSPATPLLTPLRNSRSPSMAA 1654 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Srrm234 | NP_001097475.2 | cwf21 | 58..98 | CDD:285507 | 18/39 (46%) |
MIP-T3 | 672..>936 | CDD:287245 | 89/322 (28%) | ||
SRRM_C | <1584..1610 | CDD:291883 | 8/27 (30%) | ||
Srrm2 | NP_001264083.1 | cwf21_SRRM2 | 39..102 | CDD:410601 | 28/69 (41%) |
PHA03307 | 292..>609 | CDD:223039 | 76/326 (23%) | ||
PHA03247 | <1985..2442 | CDD:223021 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 263 | 1.000 | Domainoid score | I1867 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 260 | 1.000 | Inparanoid score | I3039 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0003470 | |
OrthoInspector | 1 | 1.000 | - | - | oto98577 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_102153 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
6 | 5.950 |