DRSC/TRiP Functional Genomics Resources

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Protein Alignment Srrm234 and rsr-2

DIOPT Version :9

Sequence 1:NP_001097475.2 Gene:Srrm234 / 38206 FlyBaseID:FBgn0035253 Length:1655 Species:Drosophila melanogaster
Sequence 2:NP_001370093.1 Gene:rsr-2 / 174862 WormBaseID:WBGene00013260 Length:425 Species:Caenorhabditis elegans


Alignment Length:766 Identity:158/766 - (20%)
Similarity:241/766 - (31%) Gaps:361/766 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MYNGIGLTTPRGSGTNGHVQRNWACVRPGKKDKDYRAEDDTKKLDAQLNRPPNKEILDHDRKRKI 65
            |||||||.|.|||||||:||.|.:.:...::..:|..|||.:|::|:|||.||:||:||:|||:|
 Worm     1 MYNGIGLQTARGSGTNGYVQSNLSHLMQARRKIEYNGEDDLRKMEAELNRKPNEEIMDHNRKRQI 65

  Fly    66 EVKCLELEDILEKQGRTPEEIKSQVDSFRQKLMGQGKTDLAKDEFGRVANTTTSTATAAVRTTAT 130
            ||||.|.|.:||.:|...|:|:.:|..:|:.|:.|                              
 Worm    66 EVKCTEFEMLLEDKGLDDEDIERKVGEYRKNLLKQ------------------------------ 100

  Fly   131 ASAATASTMTTTTEATTVKVAKPKKRRKRRKRAGHAITTTTTEKSAAISTPGSKTSSPRTQTGEP 195
                                                                             
 Worm   101 ----------------------------------------------------------------- 100

  Fly   196 ASSAPSATSNGARKTKAPYFQHDNREYLAKYESFRLTAHTWNYAAVARKFKPLRPALASGANKTR 260
                                                                    |.||     
 Worm   101 --------------------------------------------------------LESG----- 104

  Fly   261 RPAVSKRTHPDCACACQQKDPEPALEPAHRTAEHSIQKELPSSQMKINIDGSVLLELLKYSSSSL 325
                                                         ::|:|..:            
 Worm   105 ---------------------------------------------ELNVDEEL------------ 112

  Fly   326 LGTLLGAGSAVATSARDTHQIAEAQQQKNARLREAFNISEYFVEGSSFDGDRKAKEDLAKSVALQ 390
                         |.:::|....|......::|.|..:.|.:|.|||.  .:..|.|:. ..|::
 Worm   113 -------------STKESHARRRAAANNRDKMRNALGLGEDYVPGSSM--AKMNKSDVV-GAAME 161

  Fly   391 KELDAQRESLAAAAAAAAAGKDKETGKRYALVRTPSRERDRDAGDAAANGDERDHVSKTDKKKRK 455
            .||.                                                    .|.||:|..
 Worm   162 SELP----------------------------------------------------QKDDKEKLL 174

  Fly   456 KRARESSASPERKKKKKSKKHKKESKSKKKRSRKRKHSESGRDSDRDSDEEDDSSEEERRESKNV 520
            :..|               .|:|        |:|::.|.|...|...|.|.....|:.|::.|..
 Worm   175 ETLR---------------LHRK--------SKKKQESSSSSSSSSSSSESSSEDEKHRKDRKKK 216

  Fly   521 RKKAK-KDKKKRDKKLKKKSRARASSSDSERTNSPSRKENKSDRSRGAKASKSDEKAPQQENVMR 584
            .||.| |:.:||.:||::|.|...:.||..:...|:...::.|       |:.|::.|:::   |
 Worm   217 EKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEED-------SRKDQRKPRED---R 271

  Fly   585 SRSRERKDTRSSRPLEASIDSRQRKPRERSAATPPRKEPERHRERSKDRQRSKEKHRSRDRLRSR 649
            .||.||:|.|..|             |:|      |:.||..||    |:||.|....|.|...|
 Worm   272 RRSVERQDQREDR-------------RDR------RRSPEDPRE----RRRSPEDRTVRRRSPER 313

  Fly   650 ERQRSRERQRSRERQRSKERQRSKERQRSIERQRSKERQRSKERQRSRSKDALRCKEKPQCNEK- 713
            .||     |||...:|.|..||..||:|..:...::.|..:...::|| .|.|..|::|..:.: 
 Worm   314 RRQ-----QRSPSVERRKSPQRRDERRRRHDSSENERRSTATASKKSR-MDELEVKQEPPSDSED 372

  Fly   714 ------------ERSRER----RRSKSKDRQRSKEKHRPKDEQQSVDKRRD 748
                        |:|.|:    |:|.|:....|.:.....|...|.|...|
 Worm   373 YIAKTNLAPIRVEKSAEKVEKSRKSSSESSSGSSDSDSSSDSSSSSDSSSD 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Srrm234NP_001097475.2 cwf21 58..98 CDD:285507 19/39 (49%)
MIP-T3 672..>936 CDD:287245 21/94 (22%)
SRRM_C <1584..1610 CDD:291883
rsr-2NP_001370093.1 cwf21_SRRM2-like 52..101 CDD:410600 25/199 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1869
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003470
OrthoInspector 1 1.000 - - oto18229
orthoMCL 1 0.900 - - OOG6_102153
Panther 1 1.100 - - LDO PTHR36562
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R267
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.930

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