DRSC/TRiP Functional Genomics Resources

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Protein Alignment alphaCOP and AT2G21390

DIOPT Version :9

Sequence 1:NP_477395.1 Gene:alphaCOP / 38199 FlyBaseID:FBgn0025725 Length:1234 Species:Drosophila melanogaster
Sequence 2:NP_179734.1 Gene:AT2G21390 / 816678 AraportID:AT2G21390 Length:1218 Species:Arabidopsis thaliana


Alignment Length:1261 Identity:675/1261 - (53%)
Similarity:883/1261 - (70%) Gaps:70/1261 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLTNFESKSARVKGLSFHPKRPWILVSLHSGVIQLWDYRMHTLLEKFDEHDGPVRGVAFHQQMPL 65
            |||.||:||.|||||||||||||||.||||||||||||||.||:::||||:||||||.||...||
plant     1 MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPL 65

  Fly    66 FVSGGDDYKIKVWNYKQRRCIFTLLAHLDYVRTVAFHHEYPWILSASDDQTIRIWNWQSRNCICV 130
            ||||||||||||||||..||:||||.||||:|||.||||.|||:||||||||||||||||.||.|
plant    66 FVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISV 130

  Fly   131 LTGHNHYVMCAQFHPTEDQIVSASLDQTVRVWDISGLRKKNVAPGPGGLDDHLKGHPGATDLFGQ 195
            |||||||||||.|||.||.:||||||||||||||..|:||:.:|.    ||.::.....:||||.
plant   131 LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALKKKSASPA----DDLMRFSQMNSDLFGG 191

  Fly   196 ADAVVKHVLEGHDRGVNWASFHPTLPLIVSGADDRLVKLWRMNEYKAWEVDTCRGHYNNVSSVLF 260
            .||:||:||||||||||||||||||||||||||||.||||||||.|||||||.|||.||||||:|
plant   192 VDAIVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMF 256

  Fly   261 HPRQDLILSNGEDRSIRVWDMTKRQCLFTFRRDNERFWILTAHPTLNLFAAGHDGGMVVFKLERE 325
            |.:||:|:||.||:||||||.|||..:.||||:::|||||..||.:||.|||||.||:|||||||
plant   257 HAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILAVHPEINLLAAGHDNGMIVFKLERE 321

  Fly   326 RPAYAVHGNILYYVKERFLRKLDFTTTKDTVVMQL-RPG-----KSPVYSMSYNPALNAVLICTR 384
            |||:|:.|:.|:|.|:||||..:::|.||:.|:.: |||     :|| .::||:|..||||||  
plant   322 RPAFALSGDSLFYAKDRFLRYYEYSTQKDSQVIPIRRPGTPSLNQSP-RTLSYSPTENAVLIC-- 383

  Fly   385 TNNLENSTYDLCQIPKDTESQSE--SDSKRSSGITAIWVARNRFAVLDRN-QQLVIKNFKNEVTK 446
             ::|:..:|:|..||||:..:|:  .|:||.:|.:|:::||||||||::: .|:::||.||||.|
plant   384 -SDLDGGSYELYIIPKDSVGRSDVVQDAKRGTGGSAVFIARNRFAVLEKSTSQVLVKNLKNEVVK 447

  Fly   447 K--LPTFCEEIFYAGTGMLLIRDPEFVTLYEVQRLVSVGSIKLAKCRYVVWSPDMSLVALLCKHS 509
            |  ||...:.|||||||.||.|..:.|.::::|:.:.:|.::....||||||.||..||||.||:
plant   448 KSSLPIPTDAIFYAGTGNLLCRSEDKVVIFDLQQRLVLGELQTPFVRYVVWSNDMESVALLSKHT 512

  Fly   510 VTICDRRLQYLCTVQENCRVKSGAWDESGVFIYTTSNHIKYAITNGDHGIIRTLDLPIYLTRVKG 574
            :.|..::|...||:.|..||||||||::|||||||.|||||.:.|||.|||||||:|||:|:|.|
plant   513 IIIASKKLVLQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSG 577

  Fly   575 NQVFCLDRECRTRVLHIDPTEYKFKLALIQRKYDEVLHMVRNARLVGQSIIAYLQQKGYPEVALH 639
            |.:|||||:.:.|.:.|:.|||.|||||:::|||.|:.|::|::|.||::||||||||:||||||
plant   578 NTIFCLDRDGKNRAITINATEYIFKLALLRKKYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVALH 642

  Fly   640 FVKDEKTRFGLALECGNIEIALEAAKALDDKDCWDRLGQSALLQGNHQVVEMCYQRTKNFDKLSF 704
            ||:||:.||.||||.|||.:|:.:|..:::||.|.|||..||.|||.::||..||:||||::|||
plant   643 FVEDERIRFNLALESGNISVAVASATEINEKDHWYRLGVEALRQGNSRIVEFAYQQTKNFERLSF 707

  Fly   705 LYLITGNLEKLKKMNKIAEIRKDVSAQYQGALLLGDVKERVNILKNCGQLSLAYLTAATHGFDEL 769
            ||||||||:||.|:.||||::.:|..|:..||.||||||||.||:|.|.|.|||:||:.||..::
plant   708 LYLITGNLDKLSKLMKIAEVKNNVMGQFHNALYLGDVKERVKILENAGHLPLAYITASVHGLTDI 772

  Fly   770 TESLGESITSQGNSLPEVNPNAQLLQPPVPIQQLETNWPLLSVSKGFFEGAMVTRAGSSATARQA 834
            .|.|...:.....|||| .....||.||.|| ....:||||.|.||.|||.:.            
plant   773 AERLAIELGDNVPSLPE-GKTPSLLMPPSPI-MCGGDWPLLRVMKGIFEGGLE------------ 823

  Fly   835 LNINADAALLDEHNGGGDG-WGADADLGLDEDGDDEMHDA-LSNDGDGGAGGE----EGAGWDVG 893
               :|:...:||.....:| ||.    |||:...|.|.:. :....||...||    |..||.: 
plant   824 ---SANRGAVDEEEEDVEGDWGE----GLDKFDVDGMENTDIEAILDGAEAGEEEDDEEGGWGL- 880

  Fly   894 DDDLVVPEELASKIKASA-LDSNYYAAPNKGLSPAQQWANNSPLVLDHVKAGSFETAFRLLHDQL 957
              ||.:|.||.:. |||| ..|:.:..|.:|:..:|.|:..|.|..:...||||:||.||||.||
plant   881 --DLDLPPELDTP-KASANARSSTFVTPPQGMPVSQIWSQKSSLAAEQAAAGSFDTAMRLLHRQL 942

  Fly   958 GVVNFQPFKTLFLQNYACSRTSYTANPNLQSLSGYPL------RNYSETNIKLQR--PAVGIKLN 1014
            |:.||.|.|::||..::.|. ||     |::.|..|:      |.:||::....|  ||:....:
plant   943 GIKNFAPLKSMFLDLFSGSH-SY-----LRAFSSSPVVPLAIERGWSESSSPNVRGPPALVFDFS 1001

  Fly  1015 DLVARLQAGYQLTTSGKFSEAVEKFHSILISIPLLVVDTKLDAAEAQQLLRICAEYIVGLKMETV 1079
            .|.|:|::||:.||:||.|||:..|.|||.:|||:||:::.:..|.::|:.|..||::||::|..
plant  1002 QLEAKLKSGYKATTAGKLSEALRVFLSILQTIPLVVVESRREVDEVKELVIIVKEYVLGLQLELK 1066

  Fly  1080 RKGMPKSTLEEQKRLCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYKTAASFARRLLELAPR 1144
            |:.|....:.:|    |:||||||||||..|..|...:|:.:.:|.||..|||.|||.||:..|.
plant  1067 RREMKDDPVRQQ----ELAAYFTHCKLQTPHLRLAYFSAMTVCYKSKNMATAAHFARSLLDTNPT 1127

  Fly  1145 -PDVAQQVRKILQACEVNPVDEHQLQYEEFNPFTICGISWKPLYRGKPEVTCPFCSSSFDPQFKG 1208
             ...|:..|:::||.|.|..|...|.|:..|||.|||.::.|:|:|:.:|.||:|::.|.|..:|
plant  1128 IESQARTARQVMQAAERNMTDATTLNYDFRNPFVICGSTYVPIYKGQKDVACPYCTARFVPSQEG 1192

  Fly  1209 NLCTVCEVSQIGKDSIGLRISNLQFR 1234
            |:|:||:::.||.|:.||..|..|.|
plant  1193 NICSVCDLAVIGADASGLLCSASQVR 1218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaCOPNP_477395.1 WD40 <2..320 CDD:225201 240/317 (76%)
WD40 5..321 CDD:238121 239/315 (76%)
WD40 repeat 15..49 CDD:293791 28/33 (85%)
WD40 repeat 57..91 CDD:293791 26/33 (79%)
WD40 repeat 97..133 CDD:293791 30/35 (86%)
WD40 repeat 138..205 CDD:293791 38/66 (58%)
WD40 repeat 212..249 CDD:293791 34/36 (94%)
WD40 repeat 255..291 CDD:293791 23/35 (66%)
WD40 repeat 299..352 CDD:293791 32/52 (62%)
Coatomer_WDAD 354..765 CDD:281977 229/421 (54%)
COPI_C 815..1228 CDD:284395 161/428 (38%)
AT2G21390NP_179734.1 WD40 9..317 CDD:238121 236/311 (76%)
WD40 repeat 15..49 CDD:293791 28/33 (85%)
WD40 repeat 55..91 CDD:293791 28/35 (80%)
WD40 repeat 96..132 CDD:293791 29/35 (83%)
WD40 repeat 139..201 CDD:293791 37/65 (57%)
WD40 repeat 207..245 CDD:293791 35/37 (95%)
WD40 repeat 251..288 CDD:293791 24/36 (67%)
WD40 repeat 295..316 CDD:293791 13/20 (65%)
Coatomer_WDAD 337..769 CDD:397941 236/435 (54%)
COPI_C 816..1212 CDD:399736 161/428 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 444 1.000 Domainoid score I99
eggNOG 1 0.900 - - E1_KOG0292
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3218
Inparanoid 1 1.050 1279 1.000 Inparanoid score I16
OMA 1 1.010 - - QHG53722
OrthoDB 1 1.010 - - D139008at2759
OrthoFinder 1 1.000 - - FOG0004006
OrthoInspector 1 1.000 - - otm3210
orthoMCL 1 0.900 - - OOG6_101600
Panther 1 1.100 - - O PTHR19876
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2767
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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