DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alphaCOP and Copb2

DIOPT Version :9

Sequence 1:NP_477395.1 Gene:alphaCOP / 38199 FlyBaseID:FBgn0025725 Length:1234 Species:Drosophila melanogaster
Sequence 2:NP_068533.2 Gene:Copb2 / 60384 RGDID:628746 Length:905 Species:Rattus norvegicus


Alignment Length:1028 Identity:254/1028 - (24%)
Similarity:430/1028 - (41%) Gaps:214/1028 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SKSARVKGLSFHPKRPWILVSLHSGVIQLWDYRMHTLLEKFDEHDGPVRGVAFHQQMPLFVSGGD 71
            ::|.|||.:..||..||:|.||::|.:.:|::...||::.|:..|.|||...|..:....|:|.|
  Rat    13 ARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGAD 77

  Fly    72 DYKIKVWNYKQRRCIFTLLAHLDYVRTVAFHHEYPWILSASDDQTIRIWNWQSR-NCICVLTGHN 135
            |.:|:|:||.....:....||.||:|.:|.|...|:||::|||..|::|:|..: :|..|..||.
  Rat    78 DMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHT 142

  Fly   136 HYVMCAQFHPTE-DQIVSASLDQTVRVWDISGLRKKNVAPGPGGLDDHLKGHPGATDLFGQADAV 199
            ||||....:|.: :|..|||||:|::||.:.                  ...|..|         
  Rat   143 HYVMQIVINPKDNNQFASASLDRTIKVWQLG------------------SSSPNFT--------- 180

  Fly   200 VKHVLEGHDRGVNWASFHP--TLPLIVSGADDRLVKLWRMNEYKAWEVDTCRGHYNNVSSVLFHP 262
                ||||::|||...::.  ..|.::|||||||||:|.......  |.|..||..|||...|||
  Rat   181 ----LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTC--VQTLEGHAQNVSCASFHP 239

  Fly   263 RQDLILSNGEDRSIRVWDMTKRQCLFTFRRDNERFWILTAHPTLNLFAAGHDGGMVVFKLERERP 327
            ...:|::..||.::|:|..:..:...|.....||.|.:.:....|..|.|:|.|.::.||.||.|
  Rat   240 ELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKLGREEP 304

  Fly   328 AYAV--HGNILY----YVKERFLRKLDFTTTKDTVVMQLR---PGKSPVY--SMSYNPALNAVLI 381
            |.::  :|.|::    .|::..|:.:..|..||...:.|.   .|...:|  ::.:||....|::
  Rat   305 AMSMDANGKIIWAKHSEVQQANLKAMGDTEIKDGERLPLAVKDMGSCEIYPQTIQHNPNGRFVVV 369

  Fly   382 C-------TRTNNLENSTYDLCQIPKDTESQSESDSKRSSGITAIWVARNRFAVLDRNQQLVIKN 439
            |       .....|.|.::...|     |.....||             :.:|:.:.|.  |:|.
  Rat   370 CGDGEYIIYTAMALRNKSFGSAQ-----EFAWAHDS-------------SEYAIRESNS--VVKI 414

  Fly   440 FKNEVTKK--LPTFCEEIFYAGTGMLLIRDPEFVTLYEVQRLVSVGSIKLAKCRYVVWSPDMSLV 502
            |||...||  .|.|..|..|.|. :|.:|....:..|:.:....:..|:: :.:::.||....||
  Rat   415 FKNFKEKKSFKPDFGAESIYGGF-LLGVRSVNGLAFYDWENTELIRRIEI-QPKHIFWSDSGELV 477

  Fly   503 ALLCKHSVTICDRRLQYLC--------------------------TVQENCRVKSGAWDESGVFI 541
            .:..:.|..|    |:||.                          .:||  .||:|.| ....||
  Rat   478 CIATEESFFI----LKYLSEKVLAAQETHEGVTEDGIEDAFEVLGEIQE--IVKTGLW-VGDCFI 535

  Fly   542 YTTS-NHIKYAITNGDHGIIRTLDLPIYLTRV--KGNQVFCLDRECRTRVLHIDPTEYKFKLALI 603
            ||:| |.:.|.: .|:...|..||..:||...  |.|:::..|:|.......:..:..:::.|::
  Rat   536 YTSSVNRLNYYV-GGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVM 599

  Fly   604 QRKY---DEVLHMVRNARLVGQSIIAYLQQKGYPEVALHFVKDEKTRFGLALECGNIEIALEAAK 665
            :|.:   |:||..:...:..  .:..:|:::|:.:.||....|.:.||.|||:.|.::||.:.|.
  Rat   600 RRDFSMADKVLPTIPKEQRT--RVAHFLEKQGFKQQALTVSTDPEHRFELALQLGELKIAYQLAV 662

  Fly   666 ALDDKDCWDRLGQSALLQGNHQVVEMCYQRTKNFDKLSFLYLITGNLEKLKKMNKIAEIRKDVSA 730
            ..:.:..|.:|.:.|:.:....:.:.|....:::..|..|...:||...:.|:.:.||.....:.
  Rat   663 EAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLLLLATASGNASMVNKLAEGAERDGKNNV 727

  Fly   731 QYQGALLLGDVKERVNILKNCGQLSLAYLTAATHGFDELTESLGESITSQGNSLPEVNPN-AQLL 794
            .:....|.|.:...:.:|...|:|..|...|.|:    |...:...:.....:|.:||.. |:.|
  Rat   728 AFMSYFLQGKLDACLELLIRTGRLPEAAFLARTY----LPSQVSRVVKLWRENLSKVNQKAAESL 788

  Fly   795 QPPVPIQQLETNWPLLSVSKGFFEGAMVTRAGSSATARQALNINADAALLDEHNGGGDGWGAD-- 857
            ..|...:.|             |.|.                  .:|.:::|       |..:  
  Rat   789 ADPTEYENL-------------FPGL------------------KEAFVVEE-------WVKETH 815

  Fly   858 ADLGLDEDGDDEMHDALSNDGDGGAGGEEGAGWDVGDDDLVVPEELASKIKASALDSNYYAAPNK 922
            |||                             |......||.|.|..:.::.:           |
  Rat   816 ADL-----------------------------WPAKQYPLVTPNEERNVMEEA-----------K 840

  Fly   923 GLSPAQQWAN--------NSPLVLDHVKAGSFETAFRLLHDQLGVVNFQPFKT 967
            |..|::..|.        :||:::........|.:|:.|.|.|..:..:...|
  Rat   841 GFQPSRATAQQEPDGKPASSPVIMASQTTHKEEKSFQELEDDLDTMELEDIDT 893

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaCOPNP_477395.1 WD40 <2..320 CDD:225201 107/316 (34%)
WD40 5..321 CDD:238121 107/317 (34%)
WD40 repeat 15..49 CDD:293791 12/33 (36%)
WD40 repeat 57..91 CDD:293791 9/33 (27%)
WD40 repeat 97..133 CDD:293791 14/36 (39%)
WD40 repeat 138..205 CDD:293791 14/67 (21%)
WD40 repeat 212..249 CDD:293791 14/38 (37%)
WD40 repeat 255..291 CDD:293791 11/35 (31%)
WD40 repeat 299..352 CDD:293791 16/58 (28%)
Coatomer_WDAD 354..765 CDD:281977 102/456 (22%)
COPI_C 815..1228 CDD:284395 25/163 (15%)
Copb2NP_068533.2 WD40 8..297 CDD:238121 107/316 (34%)
WD 1 13..52 15/38 (39%)
WD40 repeat 19..55 CDD:293791 13/35 (37%)
WD 2 55..94 13/38 (34%)
WD 3 97..136 17/38 (45%)
WD40 repeat 103..140 CDD:293791 14/36 (39%)
WD 4 140..180 17/57 (30%)
WD40 repeat 145..182 CDD:293791 14/67 (21%)
WD 5 183..224 17/42 (40%)
WD40 repeat 189..226 CDD:293791 14/38 (37%)
WD 6 227..266 13/38 (34%)
WD40 repeat 232..268 CDD:293791 11/35 (31%)
Coatomer_WDAD 319..763 CDD:397941 106/479 (22%)
WD 7 350..388 7/37 (19%)
WD 8 390..425 13/54 (24%)
WD 9 746..783 9/40 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 837..905 12/68 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122926at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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