Sequence 1: | NP_477395.1 | Gene: | alphaCOP / 38199 | FlyBaseID: | FBgn0025725 | Length: | 1234 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_068533.2 | Gene: | Copb2 / 60384 | RGDID: | 628746 | Length: | 905 | Species: | Rattus norvegicus |
Alignment Length: | 1028 | Identity: | 254/1028 - (24%) |
---|---|---|---|
Similarity: | 430/1028 - (41%) | Gaps: | 214/1028 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 7 SKSARVKGLSFHPKRPWILVSLHSGVIQLWDYRMHTLLEKFDEHDGPVRGVAFHQQMPLFVSGGD 71
Fly 72 DYKIKVWNYKQRRCIFTLLAHLDYVRTVAFHHEYPWILSASDDQTIRIWNWQSR-NCICVLTGHN 135
Fly 136 HYVMCAQFHPTE-DQIVSASLDQTVRVWDISGLRKKNVAPGPGGLDDHLKGHPGATDLFGQADAV 199
Fly 200 VKHVLEGHDRGVNWASFHP--TLPLIVSGADDRLVKLWRMNEYKAWEVDTCRGHYNNVSSVLFHP 262
Fly 263 RQDLILSNGEDRSIRVWDMTKRQCLFTFRRDNERFWILTAHPTLNLFAAGHDGGMVVFKLERERP 327
Fly 328 AYAV--HGNILY----YVKERFLRKLDFTTTKDTVVMQLR---PGKSPVY--SMSYNPALNAVLI 381
Fly 382 C-------TRTNNLENSTYDLCQIPKDTESQSESDSKRSSGITAIWVARNRFAVLDRNQQLVIKN 439
Fly 440 FKNEVTKK--LPTFCEEIFYAGTGMLLIRDPEFVTLYEVQRLVSVGSIKLAKCRYVVWSPDMSLV 502
Fly 503 ALLCKHSVTICDRRLQYLC--------------------------TVQENCRVKSGAWDESGVFI 541
Fly 542 YTTS-NHIKYAITNGDHGIIRTLDLPIYLTRV--KGNQVFCLDRECRTRVLHIDPTEYKFKLALI 603
Fly 604 QRKY---DEVLHMVRNARLVGQSIIAYLQQKGYPEVALHFVKDEKTRFGLALECGNIEIALEAAK 665
Fly 666 ALDDKDCWDRLGQSALLQGNHQVVEMCYQRTKNFDKLSFLYLITGNLEKLKKMNKIAEIRKDVSA 730
Fly 731 QYQGALLLGDVKERVNILKNCGQLSLAYLTAATHGFDELTESLGESITSQGNSLPEVNPN-AQLL 794
Fly 795 QPPVPIQQLETNWPLLSVSKGFFEGAMVTRAGSSATARQALNINADAALLDEHNGGGDGWGAD-- 857
Fly 858 ADLGLDEDGDDEMHDALSNDGDGGAGGEEGAGWDVGDDDLVVPEELASKIKASALDSNYYAAPNK 922
Fly 923 GLSPAQQWAN--------NSPLVLDHVKAGSFETAFRLLHDQLGVVNFQPFKT 967 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
alphaCOP | NP_477395.1 | WD40 | <2..320 | CDD:225201 | 107/316 (34%) |
WD40 | 5..321 | CDD:238121 | 107/317 (34%) | ||
WD40 repeat | 15..49 | CDD:293791 | 12/33 (36%) | ||
WD40 repeat | 57..91 | CDD:293791 | 9/33 (27%) | ||
WD40 repeat | 97..133 | CDD:293791 | 14/36 (39%) | ||
WD40 repeat | 138..205 | CDD:293791 | 14/67 (21%) | ||
WD40 repeat | 212..249 | CDD:293791 | 14/38 (37%) | ||
WD40 repeat | 255..291 | CDD:293791 | 11/35 (31%) | ||
WD40 repeat | 299..352 | CDD:293791 | 16/58 (28%) | ||
Coatomer_WDAD | 354..765 | CDD:281977 | 102/456 (22%) | ||
COPI_C | 815..1228 | CDD:284395 | 25/163 (15%) | ||
Copb2 | NP_068533.2 | WD40 | 8..297 | CDD:238121 | 107/316 (34%) |
WD 1 | 13..52 | 15/38 (39%) | |||
WD40 repeat | 19..55 | CDD:293791 | 13/35 (37%) | ||
WD 2 | 55..94 | 13/38 (34%) | |||
WD 3 | 97..136 | 17/38 (45%) | |||
WD40 repeat | 103..140 | CDD:293791 | 14/36 (39%) | ||
WD 4 | 140..180 | 17/57 (30%) | |||
WD40 repeat | 145..182 | CDD:293791 | 14/67 (21%) | ||
WD 5 | 183..224 | 17/42 (40%) | |||
WD40 repeat | 189..226 | CDD:293791 | 14/38 (37%) | ||
WD 6 | 227..266 | 13/38 (34%) | |||
WD40 repeat | 232..268 | CDD:293791 | 11/35 (31%) | ||
Coatomer_WDAD | 319..763 | CDD:397941 | 106/479 (22%) | ||
WD 7 | 350..388 | 7/37 (19%) | |||
WD 8 | 390..425 | 13/54 (24%) | |||
WD 9 | 746..783 | 9/40 (23%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 837..905 | 12/68 (18%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D122926at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |