DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alphaCOP and beta'COP

DIOPT Version :10

Sequence 1:NP_477395.1 Gene:alphaCOP / 38199 FlyBaseID:FBgn0025725 Length:1234 Species:Drosophila melanogaster
Sequence 2:NP_524836.2 Gene:beta'COP / 45757 FlyBaseID:FBgn0025724 Length:914 Species:Drosophila melanogaster


Alignment Length:980 Identity:245/980 - (25%)
Similarity:412/980 - (42%) Gaps:196/980 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SKSARVKGLSFHPKRPWILVSLHSGVIQLWDYRMHTLLEKFDEHDGPVRGVAFHQQMPLFVSGGD 71
            |:|.|||.:..||..||:|.:|::|.:.:.:|....:::.|:..|.|||...|..:....::|.|
  Fly    13 SRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPVRSARFVARKNWILTGSD 77

  Fly    72 DYKIKVWNYKQRRCIFTLLAHLDYVRTVAFHHEYPWILSASDDQTIRIWNWQSR-NCICVLTGHN 135
            |.:|:|:||.....:.:..||.||:|.:|.|...|.:|::|||..|::|||:.. .|..|..||.
  Fly    78 DMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWEKMWACQRVFEGHT 142

  Fly   136 HYVMCAQFHPTEDQ-IVSASLDQTVRVWDISGLRKKNVAPGPGGLDDHLKGHPGATDLFGQADAV 199
            ||||...|:|.::. ..|||||:||:||.:.    .|.|                          
  Fly   143 HYVMQIVFNPKDNNTFASASLDRTVKVWQLG----SNFA-------------------------- 177

  Fly   200 VKHVLEGHDRGVNWASFH--PTLPLIVSGADDRLVKLWRMNEYKAWEVDTCRGHYNNVSSVLFHP 262
             ...||||::|||...::  ...|.::|||||||||:|.......  |.|..||..|:|:|.|||
  Fly   178 -NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC--VQTLEGHAQNISAVCFHP 239

  Fly   263 RQDLILSNGEDRSIRVWDMTKRQCLFTFRRDN------ERFWILTAHPTLNLFAAGHDGGMVVFK 321
            ...::|:..||.::|:|...      |:|.:.      ||.|.:::....|..|.|:|.|.::.|
  Fly   240 ELPIVLTGSEDGTVRIWHSG------TYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSIIIK 298

  Fly   322 LERERPAYA--VHGNILYYVKERFLRKLDFTT----------------TKDTVVMQLRPGKSPVY 368
            :.||.||.:  |.|:.:.:.|...:::::..|                |||....::.|     .
  Fly   299 VGREEPAMSMDVVGSKIIWAKHSEMQQVNLKTIADGTEIKDGERLPVATKDMGACEIYP-----Q 358

  Fly   369 SMSYNPALNAVLICTRTNNLENSTYDLCQIPKDTESQSESDSKRSSGITAIW-VARNRFAVLDRN 432
            ::::||....|::|   .:.|...|         .|.:..:....|....:| :..|.:|:.:.|
  Fly   359 TIAHNPNGRFVVVC---GDGEYIIY---------TSMALRNKAFGSAQEFVWALESNEYAIRENN 411

  Fly   433 QQL-VIKNFKNEVTKKLPTFCEEIFYAGTGMLLIRDPEFVTLYEVQRLVSVGSIKLAKCRYVVWS 496
            ..: :.:||| |.....|.:..|..|.|. ...::....:..|:.:.|..|..|:: :.:.|.|:
  Fly   412 GTVRLFRNFK-ERKSFTPEYGAESIYGGY-YFGVKTSSGLAFYDWETLQLVRRIEV-QPKNVFWN 473

  Fly   497 PDMSLVALLCKHSVTI----------------------CDRRLQYLCTVQENCRVKSGAWDESGV 539
            ...|||.|....|..:                      .:.....|..|.| | ||:|.| ....
  Fly   474 ESGSLVCLATDDSYFVLGVDTAQVANAVETKEGLEDDGVESAFNVLGEVSE-C-VKTGLW-VGDC 535

  Fly   540 FIYTTS-NHIKYAITNGDHGIIRTLDLPIYLTRV--KGNQVFCLDRECRTRVLHIDPTEYKFKLA 601
            ||||.| |.|.|.: .|:...:..||..:||...  |.|:::..|:|.......:..:..:::.|
  Fly   536 FIYTNSVNRINYYV-GGEIVTVSHLDRTMYLLGYVPKDNRIYLGDKELNVISFCLQLSVLEYQTA 599

  Fly   602 LIQRKY---DEVL------HMVRNARLVGQSIIAYLQQKGYPEVALHFVKDEKTRFGLALECGNI 657
            :::|.:   |.||      |..|.|.        :|:::|:...||....|...:|.|||:.|::
  Fly   600 VMRRDFERADVVLPTIPKEHRTRVAH--------FLEKQGFKSQALQVSTDADHKFDLALQIGDL 656

  Fly   658 EIALEAAKALDDKDCWDRLGQSALLQGNHQVVEMCYQRTKNFDKLSFLYLITGNLEKLKKMNKIA 722
            ||||:.|:..::...|.:|...|..:.|..:|:.|.|:..:...|..|...:|:.:.|:.:....
  Fly   657 EIALKLARESENSQKWSQLADVASSKNNMSLVKECMQKANDLSGLLLLSTASGDAQLLEVVGAAG 721

  Fly   723 EIRKDVSAQYQGALLLGDVKERVNILKNCGQLSLAYLTAATHGFDELT-------ESLGESITSQ 780
            ..:...:..:..|.|..||:..:.||....:|..|...|.|:...:::       |.||:.....
  Fly   722 SAQGHHNLAFLSAFLRSDVERCLEILIETNRLPEAAFFARTYLPSQMSRIVELWREKLGKVNEKA 786

  Fly   781 GNSLPE--------------------------------VNPNAQLLQPPVPIQQL---------- 803
            |.||.:                                :..|..|.....|:|:|          
  Fly   787 GQSLADPAQYTNLFPGLGDALRVEQHLQEERARKAPARLAANLPLNSERHPLQELFAAEQGAAGQ 851

  Fly   804 ---ETNWPLLSVSKGFFEGAMVTRAGSSATARQALNINADAALLDEHNGGGDGWGADADLGLDED 865
               |...|....::.....:.|....|:|.....|::..|...||::..       ..|:.||:|
  Fly   852 HLEEKVKPAYVPAQAVVSSSQVAEPTSAADDDDDLDLEIDGITLDDNID-------TTDVNLDDD 909

  Fly   866 --GDD 868
              .||
  Fly   910 FLSDD 914

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaCOPNP_477395.1 WD40 5..321 CDD:238121 106/323 (33%)
WD40 repeat 15..49 CDD:293791 9/33 (27%)
WD40 repeat 57..91 CDD:293791 8/33 (24%)
WD40 repeat 97..133 CDD:293791 14/36 (39%)
WD40 repeat 138..205 CDD:293791 15/67 (22%)
WD40 repeat 212..249 CDD:293791 14/38 (37%)
WD40 repeat 255..291 CDD:293791 11/35 (31%)
WD40 repeat 299..352 CDD:293791 14/70 (20%)
Coatomer_WDAD_alpha 327..773 CDD:438573 111/506 (22%)
WD40 repeat 327..340 CDD:438573 4/14 (29%)
WD40 repeat 365..414 CDD:438573 7/48 (15%)
WD40 repeat 417..439 CDD:438573 4/23 (17%)
WD40 repeat 458..487 CDD:438573 5/28 (18%)
WD40 repeat 490..522 CDD:438573 8/53 (15%)
WD40 repeat 538..564 CDD:438573 9/26 (35%)
WD40 repeat 566..591 CDD:438573 6/26 (23%)
COPI_C 815..1228 CDD:462050 13/56 (23%)
beta'COPNP_524836.2 WD40 8..297 CDD:238121 106/322 (33%)
WD40 repeat 20..55 CDD:293791 9/34 (26%)
WD40 repeat 61..97 CDD:293791 9/35 (26%)
WD40 repeat 102..139 CDD:293791 14/36 (39%)
WD40 repeat 146..182 CDD:293791 14/66 (21%)
WD40 repeat 188..226 CDD:293791 15/39 (38%)
Coatomer_WDAD_beta-like 304..779 CDD:438572 111/506 (22%)
WD40 repeat 304..349 CDD:438572 7/44 (16%)
WD40 repeat 355..389 CDD:438572 8/50 (16%)
WD40 repeat 395..427 CDD:438572 8/32 (25%)
WD40 repeat 433..464 CDD:438572 6/31 (19%)
WD40 repeat 468..521 CDD:438572 8/52 (15%)
WD40 repeat 525..564 CDD:438572 16/41 (39%)
WD40 repeat 565..589 CDD:438572 5/23 (22%)

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