Sequence 1: | NP_477395.1 | Gene: | alphaCOP / 38199 | FlyBaseID: | FBgn0025725 | Length: | 1234 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_491069.1 | Gene: | copa-1 / 171860 | WormBaseID: | WBGene00022119 | Length: | 1232 | Species: | Caenorhabditis elegans |
Alignment Length: | 1253 | Identity: | 707/1253 - (56%) |
---|---|---|---|
Similarity: | 918/1253 - (73%) | Gaps: | 45/1253 - (3%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MLTNFESKSARVKGLSFHPKRPWILVSLHSGVIQLWDYRMHTLLEKFDEHDGPVRGVAFHQQMPL 65
Fly 66 FVSGGDDYKIKVWNYKQRRCIFTLLAHLDYVRTVAFHHEYPWILSASDDQTIRIWNWQSRNCICV 130
Fly 131 LTGHNHYVMCAQFHPTEDQIVSASLDQTVRVWDISGLRKKNVAPGPGGLDDHLKGHPGATDLFGQ 195
Fly 196 ADAVVKHVLEGHDRGVNWASFHPTLPLIVSGADDRLVKLWRMNEYKAWEVDTCRGHYNNVSSVLF 260
Fly 261 HPRQDLILSNGEDRSIRVWDMTKRQCLFTFRRDNERFWILTAHPTLNLFAAGHDGGMVVFKLERE 325
Fly 326 RPAYAVHGNILYYVKERFLRKLDFTTTKDTVVMQLR---PGKSPVYSMSYNPALNAVLICTRTNN 387
Fly 388 LENSTYDLCQIPKDTESQSESDSKRSSGITAIWVARNRFAVLDRNQQLVIKNFKNEVTKKLP--- 449
Fly 450 TFCEEIFYAGTGMLLIRDPEFVTLYEVQRLVSVGSIKLAKCRYVVWSPDMSLVALLCKHSVTICD 514
Fly 515 RRLQYLCTVQENCRVKSGAWDESGVFIYTTSNHIKYAITNGDHGIIRTLDLPIYLTRVKGNQVFC 579
Fly 580 LDRECRTRVLHIDPTEYKFKLALIQRKYDEVLHMVRNARLVGQSIIAYLQQKGYPEVALHFVKDE 644
Fly 645 KTRFGLALECGNIEIALEAAKALDDKDCWDRLGQSALLQGNHQVVEMCYQRTKNFDKLSFLYLIT 709
Fly 710 GNLEKLKKMNKIAEIRKDVSAQYQGALLLGDVKERVNILKNCGQLSLAYLTAATHGFDELTESLG 774
Fly 775 ESITSQGNSLPEVNPNAQLLQPPVPIQQLETNWPLLSVSKGFFEGAMVTRAGSSATARQALNIN- 838
Fly 839 -----ADAALLDEHNG--GGDGWGADADLGLDEDGDDEMHDALSNDGDGGAGGEEGAGWDVGDDD 896
Fly 897 LVVPEELASKIKASALDSNYYAAPNKGLSPAQQWANNSPLVLDHVKAGSFETAFRLLHDQLGVVN 961
Fly 962 FQPFKTLFLQNYACSRTSY-------TANPNLQSLSGYPLRNYSETNIKLQRPAVGIKLNDLVAR 1019
Fly 1020 LQAGYQLTTSGKFSEAVEKFHSILISIPLLVVDTKLDAAEAQQLLRICAEYIVGLKMETVRKGMP 1084
Fly 1085 KSTLEEQKRLCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYKTAASFARRLLELAPRPDVAQ 1149
Fly 1150 QVRKILQACEVNPVDEHQLQYEEFNPFTICGISWKPLYRGKPEVTCPFCSSSFDPQFKGNLCTVC 1214
Fly 1215 EVSQIGKDSIGLRISNLQ 1232 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
alphaCOP | NP_477395.1 | WD40 | <2..320 | CDD:225201 | 243/317 (77%) |
WD40 | 5..321 | CDD:238121 | 243/315 (77%) | ||
WD40 repeat | 15..49 | CDD:293791 | 27/33 (82%) | ||
WD40 repeat | 57..91 | CDD:293791 | 26/33 (79%) | ||
WD40 repeat | 97..133 | CDD:293791 | 27/35 (77%) | ||
WD40 repeat | 138..205 | CDD:293791 | 47/66 (71%) | ||
WD40 repeat | 212..249 | CDD:293791 | 23/36 (64%) | ||
WD40 repeat | 255..291 | CDD:293791 | 25/35 (71%) | ||
WD40 repeat | 299..352 | CDD:293791 | 34/52 (65%) | ||
Coatomer_WDAD | 354..765 | CDD:281977 | 231/416 (56%) | ||
COPI_C | 815..1228 | CDD:284395 | 186/427 (44%) | ||
copa-1 | NP_491069.1 | WD40 | 7..317 | CDD:238121 | 240/312 (77%) |
WD40 | 14..503 | CDD:225201 | 315/491 (64%) | ||
WD40 repeat | 17..51 | CDD:293791 | 27/33 (82%) | ||
WD40 repeat | 57..93 | CDD:293791 | 28/35 (80%) | ||
WD40 repeat | 98..134 | CDD:293791 | 26/35 (74%) | ||
WD40 repeat | 141..204 | CDD:293791 | 46/65 (71%) | ||
WD40 repeat | 210..243 | CDD:293791 | 21/32 (66%) | ||
WD40 repeat | 254..288 | CDD:293791 | 25/33 (76%) | ||
Coatomer_WDAD | 341..770 | CDD:281977 | 238/428 (56%) | ||
COPI_C | 820..1227 | CDD:284395 | 186/427 (44%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C160167366 | |
Domainoid | 1 | 1.000 | 483 | 1.000 | Domainoid score | I198 |
eggNOG | 1 | 0.900 | - | - | E1_KOG0292 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H3218 | |
Inparanoid | 1 | 1.050 | 1438 | 1.000 | Inparanoid score | I49 |
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S497 |
OMA | 1 | 1.010 | - | - | QHG53722 | |
OrthoDB | 1 | 1.010 | - | - | D122926at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0004006 | |
OrthoInspector | 1 | 1.000 | - | - | oto17523 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101600 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR19876 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R225 |
SonicParanoid | 1 | 1.000 | - | - | X2767 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
18 | 17.750 |