DRSC/TRiP Functional Genomics Resources

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Protein Alignment nSyb and SEC22

DIOPT Version :9

Sequence 1:NP_001261269.1 Gene:nSyb / 38196 FlyBaseID:FBgn0013342 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_013370.1 Gene:SEC22 / 850973 SGDID:S000004258 Length:214 Species:Saccharomyces cerevisiae


Alignment Length:71 Identity:16/71 - (22%)
Similarity:35/71 - (49%) Gaps:0/71 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 QKRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWLQNL 103
            |..|.|...::..|..||..|:|.:|.|...|.::.|.:.:|::.:.::.:.|.|:.....:...
Yeast   130 QDNLDQLNQELVGVKQIMSKNIEDLLYRGDSLDKMSDMSSSLKETSKRYRKSAQKINFDLLISQY 194

  Fly   104 KMMIIM 109
            ..::|:
Yeast   195 APIVIV 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nSybNP_001261269.1 Synaptobrevin 39..120 CDD:279324 16/71 (23%)
R-SNARE_VAMP2 40..102 CDD:277223 14/61 (23%)
SEC22NP_013370.1 SNC1 2..192 CDD:227472 15/61 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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