DRSC/TRiP Functional Genomics Resources

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Protein Alignment nSyb and VAMP721

DIOPT Version :9

Sequence 1:NP_001261269.1 Gene:nSyb / 38196 FlyBaseID:FBgn0013342 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_171967.1 Gene:VAMP721 / 839419 AraportID:AT1G04750 Length:219 Species:Arabidopsis thaliana


Alignment Length:89 Identity:32/89 - (35%)
Similarity:55/89 - (61%) Gaps:3/89 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 NPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKR 96
            :|.:|:   :|.:.:|||.||..:|..|:||||:|..|:..|.|:.:.|:..|..|.....:::|
plant   124 HPDEIS---KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRR 185

  Fly    97 KFWLQNLKMMIIMGVIGLVVVGII 120
            |.||||:|:.:|:..|.:.::.||
plant   186 KMWLQNMKIKLIVLAIIIALILII 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nSybNP_001261269.1 Synaptobrevin 39..120 CDD:279324 28/80 (35%)
R-SNARE_VAMP2 40..102 CDD:277223 23/61 (38%)
VAMP721NP_171967.1 Longin 7..121 CDD:341428
Synaptobrevin 127..>195 CDD:395764 27/70 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 73 1.000 Domainoid score I3265
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X424
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.810

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