DRSC/TRiP Functional Genomics Resources

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Protein Alignment nSyb and YKT61

DIOPT Version :9

Sequence 1:NP_001261269.1 Gene:nSyb / 38196 FlyBaseID:FBgn0013342 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_001154785.1 Gene:YKT61 / 835918 AraportID:AT5G58060 Length:221 Species:Arabidopsis thaliana


Alignment Length:60 Identity:18/60 - (30%)
Similarity:30/60 - (50%) Gaps:0/60 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 QQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGK 93
            |..|...:|.:.|.::||...|:...::.||.|..||..|.:::..|...:..|.:||.|
plant   154 QDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSMASQMFYKQAKK 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nSybNP_001261269.1 Synaptobrevin 39..120 CDD:279324 16/55 (29%)
R-SNARE_VAMP2 40..102 CDD:277223 16/54 (30%)
YKT61NP_001154785.1 SNC1 1..220 CDD:227472 18/60 (30%)
Longin 47..131 CDD:290490
R-SNARE_YKT6 159..219 CDD:277220 16/55 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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