DRSC/TRiP Functional Genomics Resources

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Protein Alignment nSyb and VAMP728

DIOPT Version :9

Sequence 1:NP_001261269.1 Gene:nSyb / 38196 FlyBaseID:FBgn0013342 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_001189966.1 Gene:VAMP728 / 822087 AraportID:AT3G24890 Length:124 Species:Arabidopsis thaliana


Alignment Length:94 Identity:25/94 - (26%)
Similarity:45/94 - (47%) Gaps:26/94 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 NPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDD--------------RADALQQ 82
            :|::|:   :|.:.:|.|.::..:|..|:||.|:|..|:..|.|              :.|.:..
plant    25 HPEEIS---KLAKVKALVTKMKGVMMENIEKALDRSEKIKILVDLRSKYSNLPFPSYGQEDIITP 86

  Fly    83 GASQFEQQAGKLKRKFWLQNLKM-MIIMG 110
            |.        |:.||.|.||:|. :|::|
plant    87 GT--------KITRKMWFQNMKFKLIVLG 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nSybNP_001261269.1 Synaptobrevin 39..120 CDD:279324 23/87 (26%)
R-SNARE_VAMP2 40..102 CDD:277223 18/75 (24%)
VAMP728NP_001189966.1 Synaptobrevin 28..107 CDD:279324 23/89 (26%)
SNARE 30..100 CDD:304603 20/80 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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