DRSC/TRiP Functional Genomics Resources

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Protein Alignment nSyb and SAR1

DIOPT Version :9

Sequence 1:NP_001261269.1 Gene:nSyb / 38196 FlyBaseID:FBgn0013342 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_001031469.1 Gene:SAR1 / 817874 AraportID:AT2G33120 Length:229 Species:Arabidopsis thaliana


Alignment Length:92 Identity:31/92 - (33%)
Similarity:58/92 - (63%) Gaps:5/92 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 NPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKR 96
            :|.:|:   :|.:.:|||.||..:|..|:||||:|..|:..|.|:.:.|:..|..|..|..:::|
plant   132 HPDEIS---KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRR 193

  Fly    97 KFWLQN--LKMMIIMGVIGLVVVGIIA 121
            |.|.||  :|::::..:|.|:::.|::
plant   194 KMWFQNMKIKLIVLAIIIALILIIILS 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nSybNP_001261269.1 Synaptobrevin 39..120 CDD:279324 28/82 (34%)
R-SNARE_VAMP2 40..102 CDD:277223 23/61 (38%)
SAR1NP_001031469.1 Longin 32..111 CDD:290490
Synaptobrevin 135..>203 CDD:279324 26/70 (37%)
R-SNARE 138..196 CDD:277196 22/57 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 73 1.000 Domainoid score I3265
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X424
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.810

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