DRSC/TRiP Functional Genomics Resources

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Protein Alignment nSyb and VAMP7

DIOPT Version :9

Sequence 1:NP_001261269.1 Gene:nSyb / 38196 FlyBaseID:FBgn0013342 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_001172112.1 Gene:VAMP7 / 6845 HGNCID:11486 Length:260 Species:Homo sapiens


Alignment Length:20 Identity:10/20 - (50%)
Similarity:15/20 - (75%) Gaps:0/20 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 RLQQTQAQVDEVVDIMRTNV 60
            ::.:|||||||:..||..|:
Human   125 KVMETQAQVDELKGIMVRNI 144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nSybNP_001261269.1 Synaptobrevin 39..120 CDD:279324 10/20 (50%)
R-SNARE_VAMP2 40..102 CDD:277223 10/20 (50%)
VAMP7NP_001172112.1 Longin 29..104 CDD:316307
SNARE 124..>144 CDD:328933 9/18 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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