DRSC/TRiP Functional Genomics Resources

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Protein Alignment nSyb and vamp1a

DIOPT Version :10

Sequence 1:NP_001261269.1 Gene:nSyb / 38196 FlyBaseID:FBgn0013342 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_998563.1 Gene:vamp1a / 406707 ZFINID:ZDB-GENE-040426-2725 Length:119 Species:Danio rerio


Alignment Length:117 Identity:75/117 - (64%)
Similarity:89/117 - (76%) Gaps:7/117 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 AAPAGDAPPNA-GAPAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERD 67
            :||...|.|.| |||.|||      |.|..|..:.:.:|||||||||||||||||.||:||||||
Zfish     2 SAPDAAASPGAPGAPEGEG------GAPAQPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERD 60

  Fly    68 SKLSELDDRADALQQGASQFEQQAGKLKRKFWLQNLKMMIIMGVIGLVVVGI 119
            .|||||||||||||.||||||..|.|||.|:|.:|:|||||||::|::::||
Zfish    61 QKLSELDDRADALQAGASQFESSAAKLKNKYWWKNMKMMIIMGIMGIILLGI 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nSybNP_001261269.1 R-SNARE_VAMP2 40..102 CDD:277223 50/61 (82%)
vamp1aNP_998563.1 R-SNARE_VAMP2 33..95 CDD:277223 50/61 (82%)

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