DRSC/TRiP Functional Genomics Resources

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Protein Alignment nSyb and sec22b

DIOPT Version :9

Sequence 1:NP_001261269.1 Gene:nSyb / 38196 FlyBaseID:FBgn0013342 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_989156.1 Gene:sec22b / 394761 XenbaseID:XB-GENE-999421 Length:215 Species:Xenopus tropicalis


Alignment Length:80 Identity:22/80 - (27%)
Similarity:39/80 - (48%) Gaps:0/80 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 AQKRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWLQN 102
            |::.|.....::.:|..||..|:|:||.|...||.||.:|..|...:.::.|.|..|..:.....
 Frog   131 ARRNLSSVNTELQDVQRIMVANIEEVLLRGEALSALDSKASNLSTLSKKYRQDAKYLNMRSTYAK 195

  Fly   103 LKMMIIMGVIGLVVV 117
            |..:.:..|:.:|.:
 Frog   196 LAAVAVFSVMLIVYI 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nSybNP_001261269.1 Synaptobrevin 39..120 CDD:279324 21/79 (27%)
R-SNARE_VAMP2 40..102 CDD:277223 18/61 (30%)
sec22bNP_989156.1 Longin 3..126 CDD:341428
R-SNARE_SEC22 132..195 CDD:277219 18/62 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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