Protein Alignment nSyb and Vamp2

DIOPT Version :10

• Sequence 1: NP_001261269.1
• Gene: nSyb / 38196
• FlyBaseID: FBgn0013342
• Length: 206
• Species: Drosophila melanogaster
• Sequence 2: XP_006246655.1
• Gene: Vamp2 / 24803
• RGDID: 3949
• Length: 135
• Species: Rattus norvegicus
• Alignment Length: 117
• Identity: 76/117 - (64%)
• Similarity: 87/117 - (74%)
• Gaps: 8/117 - (6%)

  Fly     4 AAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERDS 68
            :|.|...||  .|||||||.      |..|..:.:.:|||||||||||||||||.||:||||||.
  Rat     2 SATAATVPP--AAPAGEGGP------PAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ 58

  Fly    69 KLSELDDRADALQQGASQFEQQAGKLKRKFWLQNLKMMIIMGVIGLVVVGII 120
            |||||||||||||.||||||..|.|||||:|.:|||||||:|||..:::.||
  Rat    59 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIII 110

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nSyb	NP_001261269.1	R-SNARE_VAMP2	40..102	CDD:277223	51/61 (84%)
Vamp2	XP_006246655.1	R-SNARE_VAMP2	30..92	CDD:277223	51/61 (84%)