DRSC/TRiP Functional Genomics Resources

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Protein Alignment nSyb and snb-5

DIOPT Version :10

Sequence 1:NP_001261269.1 Gene:nSyb / 38196 FlyBaseID:FBgn0013342 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_498790.1 Gene:snb-5 / 191767 WormBaseID:WBGene00004899 Length:102 Species:Caenorhabditis elegans


Alignment Length:96 Identity:28/96 - (29%)
Similarity:53/96 - (55%) Gaps:8/96 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 HNPQQIAA----QKRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQA 91
            |.|..::.    .:::.:|:.::|.|..||:.||:|::||..||.:|.:||..|::.:..:.:.|
 Worm     3 HQPPPVSRIGWDDQKIMRTRRELDSVKAIMKENVQKIMERQGKLDDLVERAQRLEEASDVYVKCA 67

  Fly    92 GKLKRKF-WLQNLKMMIIMGVIGLVVVGIIA 121
            .|:||:. |..|   .:..|:|.:..|...|
 Worm    68 VKIKREMSWKAN---SLRYGIIAVSSVSAFA 95

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nSybNP_001261269.1 R-SNARE_VAMP2 40..102 CDD:277223 21/62 (34%)
snb-5NP_498790.1 Synaptobrevin 14..88 CDD:395764 24/76 (32%)

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