DRSC/TRiP Functional Genomics Resources

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Protein Alignment nSyb and sec-22

DIOPT Version :9

Sequence 1:NP_001261269.1 Gene:nSyb / 38196 FlyBaseID:FBgn0013342 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_508198.1 Gene:sec-22 / 180456 WormBaseID:WBGene00018853 Length:214 Species:Caenorhabditis elegans


Alignment Length:68 Identity:19/68 - (27%)
Similarity:37/68 - (54%) Gaps:2/68 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 QVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWLQNLKMMIIMGVI 112
            ::.:|..||.||:|.|:.|...|:.|::||..|...:.::...|..|.|:..:  .|:...:|:.
 Worm   140 ELQDVTRIMVTNIEDVIHRGEALNILENRASELSGMSKKYRDDAKALNRRSTI--FKVAASIGIA 202

  Fly   113 GLV 115
            |::
 Worm   203 GVL 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nSybNP_001261269.1 Synaptobrevin 39..120 CDD:279324 19/68 (28%)
R-SNARE_VAMP2 40..102 CDD:277223 16/53 (30%)
sec-22NP_508198.1 Longin 38..103 CDD:290490
R-SNARE_SEC22 131..194 CDD:277219 16/55 (29%)
Synaptobrevin 134..214 CDD:279324 19/68 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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