DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GC and Ggcx

DIOPT Version :9

Sequence 1:NP_001163323.1 Gene:GC / 38194 FlyBaseID:FBgn0035245 Length:672 Species:Drosophila melanogaster
Sequence 2:NP_062776.1 Gene:Ggcx / 56316 MGIID:1927655 Length:757 Species:Mus musculus


Alignment Length:630 Identity:266/630 - (42%)
Similarity:372/630 - (59%) Gaps:45/630 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 HKSAKKSFLPQNAFFRDCLGHDLSNFTSLTNFTSWLNRPVDGAALGIFRLLYGAAMLIDIAEERG 101
            :|||:.|.|.|.:.....||.:.::.:|..:..:.||:|.|.|.|.:||.|:...||:||.:|||
Mouse    20 NKSAQTSGLKQGSRMEKILGFEWTDLSSWQSVVTLLNKPTDPANLAVFRFLFAFLMLLDIPQERG 84

  Fly   102 GGQLDVRFQEPLH-CHFPLFNGMRALDYPLMGCVYLCMWLGAWGIMLGYRFRTSCLAFLIPYWYI 165
            ...||.::.:.|. |.|||.:.:|.|....|..||..|:|||.|:|||..:|.||:.||:||||:
Mouse    85 LSSLDRKYLDGLDVCRFPLLDALRPLPLDWMYLVYTIMFLGALGMMLGLCYRLSCVLFLLPYWYV 149

  Fly   166 FLLDKPTWNNHSYLFGLVGTLLLFTQAESYCSLDRWLNPRKSHC-IPYWNYFLIKFQFFILYMYA 229
            |||||.:|||||||:||:...|.|..|..|.|:|..||.||.:. :|.|||.:::.|.||:|..|
Mouse   150 FLLDKTSWNNHSYLYGLLAFQLTFMDANHYWSVDGLLNARKKNAHVPLWNYTVLRGQIFIVYFIA 214

  Fly   230 GLKKFSLEWLSGYAMSNLSYHWVFAPFRQVIDPELIDLLIVHWFTAFFDVSIAFFMTLEKTRLLV 294
            |:||...:|:.||:|.:||.||:|:||:.|:..||..||:|||.....|:|..|.:..:.:|.:.
Mouse   215 GVKKLDADWVGGYSMEHLSRHWLFSPFKLVLSEELTSLLVVHWCGLLLDLSAGFLLFFDASRPVG 279

  Fly   295 TPFMLSFHLMNSRLFVIGMFPWVCLAEVPLFFSFDWPRRLGNW--SKIQDVHPKD--PEEELS-- 353
            ..|:..||.|||:||.|||||:|.||..|||.|.:|||:|...  .::|::.|..  |....|  
Mouse   280 LFFVSYFHCMNSQLFSIGMFPYVMLASSPLFCSAEWPRKLVARCPKRLQELLPTKAAPRPSASCV 344

  Fly   354 ----------KPGILARLRTGLILAYCGLQLFLPYSHFITKGYNNWTNGLYGYSWDMMVHSYDTL 408
                      |||:..:|.....|.|...|||||||||:|:||||||||||||||||||||....
Mouse   345 YKRSRGKAGPKPGLRHQLGAIFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDMMVHSRSHQ 409

  Fly   409 QTSIQVVDNESRQVHNLNPYAFTEYDRWTKYADMAVQYARCI-----EENLQEKQPHIGRNISIY 468
            ...|...|..:.::..|||..||:..||..:|||..|||.|:     :.|:.|.|        ||
Mouse   410 HVKITYRDGLTGELGYLNPGVFTQSRRWKDHADMLKQYATCLSLLLPKYNVTEPQ--------IY 466

  Fly   469 FDIWCSMNGRFQQRSFDPREDLLRAKWSPFESTSWSLPLLNELNHMRPKLRTIETEVLAWNNYSD 533
            ||||.|:|.|||||.||||.|:::|.||||:.|.|..|||.:|:..|.||:.|::.:   :|:::
Mouse   467 FDIWVSINDRFQQRLFDPRVDIVQAVWSPFQRTPWVQPLLMDLSPWRTKLQDIKSSL---DNHTE 528

  Fly   534 VIFVADFPGLTLTNFISPDLINCTLTILEGNVRYRNERDPEAYFLTAGKSIGLESNITHLVTTIG 598
            |:|:||||||.|.||:|.||.|.::.:|:|.|......:.:...|..|:.:.|.:...|.|.|:.
Mouse   529 VVFIADFPGLHLENFVSEDLGNTSIQLLQGEVTVELVAEQKNQTLQEGEKMQLPAGEYHKVYTVS 593

  Fly   599 QKPASYLFTYTNKTMLEQGITIEQPDTEERSVLPLWQEFQHRVTN 643
            ..|:.|::.|.|.|    .:.:||.       |...||.:.:|.|
Mouse   594 SSPSCYMYVYVNTT----EVALEQD-------LAYLQELKEKVEN 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCNP_001163323.1 HTTM 73..330 CDD:214802 123/258 (48%)
VKG_Carbox 83..505 CDD:282887 206/444 (46%)
cupin_like <557..608 CDD:304367 11/50 (22%)
GgcxNP_062776.1 HTTM 56..315 CDD:214802 123/258 (48%)
VKG_Carbox 66..502 CDD:282887 205/443 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 729..757
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167837668
Domainoid 1 1.000 395 1.000 Domainoid score I760
eggNOG 1 0.900 - - E1_28JF2
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H639
Inparanoid 1 1.050 487 1.000 Inparanoid score I1413
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG50094
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0008238
OrthoInspector 1 1.000 - - oto94439
orthoMCL 1 0.900 - - OOG6_105840
Panther 1 1.100 - - LDO PTHR12639
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5771
SonicParanoid 1 1.000 - - X6209
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

Return to query results.
Submit another query.