DRSC/TRiP Functional Genomics Resources

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Protein Alignment ABCB7 and Mdr49

DIOPT Version :9

Sequence 1:NP_728642.2 Gene:ABCB7 / 38193 FlyBaseID:FBgn0035244 Length:743 Species:Drosophila melanogaster
Sequence 2:NP_523724.2 Gene:Mdr49 / 36428 FlyBaseID:FBgn0004512 Length:1302 Species:Drosophila melanogaster


Alignment Length:590 Identity:179/590 - (30%)
Similarity:293/590 - (49%) Gaps:54/590 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 LVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDAVLSAATALMLGYGIARASAA 217
            ||.:.||:      |:......:|..  |....:|..:.:....|::..|||  .|.|....|.|
  Fly    74 LVDRTVGV------GTSSPAFALPMF--GGGQQLTNASKEENNQAIIDDATA--FGIGSLVGSVA 128

  Fly   218 GFNELRNAV--FAKVAHHSIRKIASNVFLHLHNLDLAFHLNKQTGA-----LSKTIDRGSRGINF 275
            .|..:..|:  ..::|.:.|.:|.......:...|:|:: :..:|:     :::.:|:...||..
  Fly   129 MFLLITLAIDLANRIALNQIDRIRKLFLEAMLRQDIAWY-DTSSGSNFASKMTEDLDKLKEGIGE 192

  Fly   276 VLSAMVFNIVPTIFELALVSS-ILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQAE 339
            .:..:||.|:  .|.:.:||: :.|.|..|    |.:.||....|.|..|.:.:........::.
  Fly   193 KIVIVVFLIM--TFVIGIVSAFVYGWKLTL----VVLSCVPFIIAATSVVARLQGSLAEKELKSY 251

  Fly   340 NEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAIFSSALSL 404
            ::|.|...:......||..|:.::.|...:.::|...|    .|.....|.:...||:....:.|
  Fly   252 SDAANVVEEVFSGIRTVFAFSGQEKEKERFGKLLIPAE----NTGRKKGLYSGMGNALSWLIIYL 312

  Fly   405 IMVLA----------AKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREVRQALLDMRAMFT 459
            .|.||          .:::.....|...||:|   ||.:.:....||.....|....:...|..|
  Fly   313 CMALAIWYGVTLILDERDLPDRVYTPAVLVIV---LFAVIMGAQNLGFASPHVEAIAVATAAGQT 374

  Fly   460 LMNVDSSIQTAANAQPL-----FVDTTNSSIEFRNVSFEYEPGKP---IFRDLSFTIPAGKNVAI 516
            |.|:   |...:...|:     ..:.|...|.|..:.|.| |.:|   |.:.|:..:..|:.||.
  Fly   375 LFNI---IDRPSQVDPMDEKGNRPENTAGHIRFEGIRFRY-PARPDVEILKGLTVDVLPGQTVAF 435

  Fly   517 VGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHY 581
            ||.||.|||::::|:.||::|.:|.|.:.|:|:..:::..||..|.||.|:.|||..||..||.|
  Fly   436 VGASGCGKSTLIQLMQRFYDPEAGSVKLDGRDLRTLNVGWLRSQIGVVGQEPVLFATTIGENIRY 500

  Fly   582 GNLSKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFD 646
            |..|.:.|:::.|||.|:.||.|...|..|.|||||:|.::|||:|||:|||||:::...:|:.|
  Fly   501 GRPSATQADIEKAARAANCHDFITRLPKGYDTQVGEKGAQISGGQKQRIAIARALVRQPQVLLLD 565

  Fly   647 EATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGRVGERGTHSELLRQNG 711
            ||||:||..:|..:..||..|:.|.|::.:||||||:.:||:|:.|::|.|.|:|||.||:.:.|
  Fly   566 EATSALDPTSEKRVQSALELASQGPTTLVVAHRLSTITNADKIVFLKDGVVAEQGTHEELMERRG 630

  Fly   712 LYARL 716
            ||..|
  Fly   631 LYCEL 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCB7NP_728642.2 ABC_membrane 164..437 CDD:294371 60/290 (21%)
ATM1 222..717 CDD:227590 162/521 (31%)
P-loop_NTPase 485..720 CDD:304359 105/235 (45%)
Mdr49NP_523724.2 MdlB 34..640 CDD:224055 179/590 (30%)
ABC_membrane 116..352 CDD:279056 54/251 (22%)
ABC_MTABC3_MDL1_MDL2 402..636 CDD:213216 105/235 (45%)
MdlB 735..1299 CDD:224055
ABC_membrane 739..998 CDD:279056
ABC_MTABC3_MDL1_MDL2 1059..1298 CDD:213216
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24221
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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