DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12104 and jigr1

DIOPT Version :9

Sequence 1:NP_001261267.1 Gene:CG12104 / 38187 FlyBaseID:FBgn0035238 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001097920.1 Gene:jigr1 / 43093 FlyBaseID:FBgn0039350 Length:336 Species:Drosophila melanogaster


Alignment Length:253 Identity:40/253 - (15%)
Similarity:73/253 - (28%) Gaps:124/253 - (49%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DEVFELTDTPAESQSPSQASRRMLSLDQSM----------------LNDDDEENCDTYASGG--- 56
            :|.:|:.|..::|.....:.:..|..|..:                ||:.||.|....::.|   
  Fly   133 EETYEVDDCRSDSNGHMNSIKDELEDDSEIFDCEQALPVTTVLGIPLNNSDEANKSQRSTNGEMP 197

  Fly    57 ---GQNLLV---------QPE----------QQQNQAMAQ--------------------APPKP 79
               |.|...         |||          .:.|:..:|                    .|.:|
  Fly   198 NGKGYNHFAESYHRRHQNQPEYIISSPIVNPMRSNKRGSQHLDDHPSKRRVDDSLSISGYYPTQP 262

  Fly    80 LAP----FALF--FRDTVTAIKQQNPTCSLEQMQVIVQTMWESLDETQKNVYALRHEQEKREYVR 138
            |||    :|.|  |.:.:.     :..|.:.....:                            |
  Fly   263 LAPLPPAYAKFRGFGEFMC-----HSLCDMPAATAL----------------------------R 294

  Fly   139 LMRGYRHQL------SESEGTSEAEAPPAVATNQPPPLVTTKLESVEDLQQSVDAQQE 190
            |::.:..:|      :|..|:.|                  |.:.|:.:.||.::|:|
  Fly   295 LVQKFTRELVQSSLRNEDSGSKE------------------KTDEVDPVDQSSESQEE 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12104NP_001261267.1 HMG-box 76..140 CDD:238037 10/69 (14%)
jigr1NP_001097920.1 MADF 33..118 CDD:214738
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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