Protein Alignment CG12104 and Hmgb3

DIOPT Version :10

• Sequence 1: NP_647629.1
• Gene: CG12104 / 38187
• FlyBaseID: FBgn0035238
• Length: 250
• Species: Drosophila melanogaster
• Sequence 2: NP_001385705.1
• Gene: Hmgb3 / 305373
• RGDID: 1564407
• Length: 241
• Species: Rattus norvegicus
• Alignment Length: 182
• Identity: 41/182 - (22%)
• Similarity: 79/182 - (43%)
• Gaps: 32/182 - (17%)

  Fly    23 SQSPSQASRRMLSLDQSMLND--------DDEENCDTYASGGGQNLLVQPEQQQNQAMAQAPPKP 79
            |:..|:..:.|.|.::|..::        .|.|..|...:.||:.     ::..|     ||.:|
  Rat    83 SKKCSERWKTMSSKEKSKFDEMAKADKVRYDREMKDYGPAKGGKK-----KKDPN-----APKRP 137

  Fly    80 LAPFALFFRDTVTAIKQQNPTCSLEQMQVIVQTMWESLDETQKNVYALRHEQEKREYVRLMRGYR 144
            .:.|.||..:....||..||..|:..:...:..||.:|.:::|..|..:..:.|.:|.:.:..|:
  Rat   138 PSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYMTKAAKLKEKYEKDVADYK 202

  Fly   145 HQLSESEGTSE-AEAPPAVATNQPPPLVTTKLESVEDLQQSVDAQQEPPPDQ 195
                 |:|..: |:.|..||..        |:|..|:.::..:.::|...|:
  Rat   203 -----SKGKFDGAKGPAKVARK--------KVEEEEEEEEEEEEEEEEEEDE 241

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12104	NP_647629.1	HMG-box_SF	78..144	CDD:469606	16/65 (25%)
Hmgb3	NP_001385705.1	HMG-box_HMGB_rpt1	54..117	CDD:438794	7/33 (21%)
		HMG-box_HMGB_rpt2	132..202	CDD:438795	19/74 (26%)