DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12104 and ubtf

DIOPT Version :10

Sequence 1:NP_647629.1 Gene:CG12104 / 38187 FlyBaseID:FBgn0035238 Length:250 Species:Drosophila melanogaster
Sequence 2:XP_002935582.2 Gene:ubtf / 100135747 XenbaseID:XB-GENE-966565 Length:700 Species:Xenopus tropicalis


Alignment Length:187 Identity:43/187 - (22%)
Similarity:83/187 - (44%) Gaps:19/187 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 QNLLVQPEQQQNQAMAQAPPKPLAP--FALFFRDTVTAIKQQNPTCSLEQMQVIVQTMWESLDET 120
            ::.|.:.|:|........|.|| .|  ::::..:.:..:|.   ..|.|:| |:....|:.|.:.
 Frog   279 RSTLTKAERQLKDKFDGRPTKP-PPNSYSMYCAELMANMKD---VPSTERM-VLCSQRWKLLSQK 338

  Fly   121 QKNVYALRHEQEKREY-VRLMRGYRHQLSESEG----TSEAEAPPAVATNQPPPLVTTKLESVED 180
            :|:.|..:.||:|:|| |.||| :...|.|.|.    ..|........||.|...:.|: ::.:.
 Frog   339 EKDAYHKKCEQKKKEYEVELMR-FLENLPEEEQQRVLAEEKMVGIRKGTNTPASKMATQ-DAAKV 401

  Fly   181 LQQSVDAQQEPPPDQIQLLTEAARVQKCTREQCNKPAIINPDWEDEYCSNECVVIHC 237
            ..:|..|.::...|:...|.|..:    |.|:..:.::|. |:...:.::....:.|
 Frog   402 KSRSSQADKKKAADERAKLPETPK----TAEEIWQQSVIG-DYLARFKNDRAKALKC 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12104NP_647629.1 HMG-box_SF 78..144 CDD:469606 21/68 (31%)
ubtfXP_002935582.2 HMG-box_UBF1_rpt1-like 109..185 CDD:438814
HMG-box_UBF1_rpt2 196..270 CDD:438815
HMG-box_UBF1_rpt3 297..379 CDD:438816 26/87 (30%)
HMG-box_SF 418..501 CDD:469606 7/41 (17%)
HMG-box_UBF1_rpt6-like 504..589 CDD:438819
Blue background indicates that the domain is not in the aligned region.

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