DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13917 and fam53a

DIOPT Version :9

Sequence 1:NP_001189017.1 Gene:CG13917 / 38186 FlyBaseID:FBgn0035237 Length:2019 Species:Drosophila melanogaster
Sequence 2:NP_001008138.1 Gene:fam53a / 493500 XenbaseID:XB-GENE-920487 Length:413 Species:Xenopus tropicalis


Alignment Length:379 Identity:74/379 - (19%)
Similarity:120/379 - (31%) Gaps:140/379 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1645 NGHGAGPVRSATSSSIPANGGRKAPAKNLHI---SSSDSS---RNSSPAARRVQNGTRLGNKSSN 1703
            |.||.|.::.:||.|:|.|     |....||   |:.|:|   |.||.::..|.:..  |:.:||
 Frog   166 NSHGGGNLQRSTSISLPQN-----PLTVKHIFAASNCDTSPVQRPSSASSGFVDSNE--GSAASN 223

  Fly  1704 LSMDSLASPARRAKSSSRGPQERYSSDQNSLAESMKSSVITNKTISHESLSGSSKLARIQQINGH 1768
            :..:| |.|      |...|:.|:|..|..:.|:...|...|.|     .:.:.:|.|.|     
 Frog   224 VRWNS-AGP------SEFNPRRRFSLSQEHITENADLSPSANST-----PTSTPELRRRQ----- 271

  Fly  1769 SKGAATGKIKATQRGSTVGNKSTRQLKQQHNAMASNGSSPSSVHTTKSAASRLSSVSSTLSTREL 1833
                  |.::...:...:..:.|| ||::                      |...|..|..:.:.
 Frog   272 ------GLLRCRSQPCVLNERKTR-LKRR----------------------RDEDVRWTRPSLDF 307

  Fly  1834 FKQRSISVPAGGTDGAPNKGRHSFLSAKSREILAKRAEKNKLQQQQQQQKQTEAPVEERGSVQLR 1898
            ||.                               .|..||.........::.|.|          
 Frog   308 FKM-------------------------------TRTLKNSKSLCSLDYEEDEDP---------- 331

  Fly  1899 SSAGPLRSSSHSAVSSMLQQHNLRNSLPSNIPTRRPNTLHLKKTTAATNGVGGGPTKTT-TNGMS 1962
                    ...:.|||.....:|.:|:..                      |..|.|.: .:..|
 Frog   332 --------HMKTIVSSPCDSDDLMSSITP----------------------GSSPAKESFADAGS 366

  Fly  1963 NGTYKSAQAVKQKLDLLIDAQMESVVPRERVESKLERSSTFCKDSADLDISELQ 2016
            .|.:::|...:..|.       ||.......||  ...|:|..|..|||:.:::
 Frog   367 QGPFRAAHTREPPLS-------ESEEDTSDCES--SEGSSFPTDCGDLDLEQIE 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13917NP_001189017.1 BTB 1117..>1185 CDD:279045
BTB 1128..>1191 CDD:197585
BACK 1238..>1281 CDD:197943
fam53aNP_001008138.1 FAM53 1..312 CDD:373675 47/229 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 56 1.000 Domainoid score I10889
eggNOG 1 0.900 - - E1_2CN92
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007444
OrthoInspector 1 1.000 - - oto103087
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.900

Return to query results.
Submit another query.